# Alphafold Predictor

> AlphaFold protein structure prediction skill with confidence assessment and model analysis

- Skill: `a5c-ai/alphafold-predictor` (Agent Skill)
- Install (CLI): `npx skillmds@latest add a5c-ai/alphafold-predictor`
- Raw SKILL.md: https://api.skillmd.com/api/skills/a5c-ai/alphafold-predictor/raw
- Safety review: pending (external: skill-scanner PASS, skillspector PASS)
- Works with: Claude Code, Claude.ai, OpenAI Codex
- Category: AI & ML
- Author: a5c-ai (https://skillmd.com/u/a5c-ai)
- Updated: 2026-09-09
- Page: https://skillmd.com/skills/a5c-ai/alphafold-predictor

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# AlphaFold Predictor Skill

## Purpose
Enable AlphaFold protein structure prediction with confidence assessment and model analysis.

## Capabilities
- Structure prediction execution
- pLDDT confidence scoring
- PAE analysis
- Multi-chain complex prediction
- Template-based refinement
- ColabFold integration

## Usage Guidelines
- Review pLDDT scores for prediction confidence
- Analyze PAE for domain boundaries
- Predict complexes for multi-protein assemblies
- Use templates when homologs exist
- Validate predictions against experimental data
- Document model versions and parameters

## Dependencies
- AlphaFold2
- ColabFold
- RoseTTAFold

## Process Integration
- Protein Structure Prediction (protein-structure-prediction)
- Molecular Docking and Virtual Screening (molecular-docking)