# Igv Genome Browser

> IGV integration skill for interactive genome visualization and review

- Skill: `a5c-ai/igv-genome-browser` (Agent Skill)
- Install (CLI): `npx skillmds@latest add a5c-ai/igv-genome-browser`
- Raw SKILL.md: https://api.skillmd.com/api/skills/a5c-ai/igv-genome-browser/raw
- Safety review: pending (external: skill-scanner PASS, skillspector PASS)
- Works with: Claude Code, Claude.ai, OpenAI Codex
- Category: Integrations & APIs
- Author: a5c-ai (https://skillmd.com/u/a5c-ai)
- Updated: 2026-09-09
- Page: https://skillmd.com/skills/a5c-ai/igv-genome-browser

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# IGV Genome Browser Skill

## Purpose
Enable IGV integration for interactive genome visualization and review.

## Capabilities
- BAM/VCF/BED visualization
- Batch screenshot generation
- Session management
- Track customization
- Region navigation
- Multi-sample comparison

## Usage Guidelines
- Load appropriate reference genome
- Configure tracks for analysis needs
- Generate batch screenshots for reports
- Save sessions for reproducibility
- Navigate to regions of interest
- Compare multiple samples visually

## Dependencies
- IGV
- IGV.js
- JBrowse2

## Process Integration
- Clinical Variant Interpretation (clinical-variant-interpretation)
- Tumor Molecular Profiling (tumor-molecular-profiling)
- Whole Genome Sequencing Pipeline (wgs-analysis-pipeline)