# Ucsc Genome Browser Querier

> UCSC Genome Browser query skill for genome annotation retrieval and track data access

- Skill: `a5c-ai/ucsc-genome-browser-querier` (Agent Skill)
- Install (CLI): `npx skillmds@latest add a5c-ai/ucsc-genome-browser-querier`
- Raw SKILL.md: https://api.skillmd.com/api/skills/a5c-ai/ucsc-genome-browser-querier/raw
- Safety review: pending (external: skill-scanner PASS, skillspector PASS)
- Works with: Claude Code, Claude.ai, OpenAI Codex
- Category: Coding & Dev Tools
- Author: a5c-ai (https://skillmd.com/u/a5c-ai)
- Updated: 2026-09-09
- Page: https://skillmd.com/skills/a5c-ai/ucsc-genome-browser-querier

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# UCSC Genome Browser Querier Skill

## Purpose
Provide UCSC Genome Browser queries for genome annotation retrieval and track data access.

## Capabilities
- Track data retrieval
- Custom track upload
- Genome annotation queries
- Conservation score extraction
- Table browser queries
- bigWig/bigBed handling

## Usage Guidelines
- Query relevant annotation tracks
- Upload custom data for visualization
- Extract conservation scores for analysis
- Use Table Browser for data extraction
- Handle bigWig/bigBed formats efficiently
- Document genome assembly versions

## Dependencies
- UCSC API
- kent utilities
- pyBigWig

## Process Integration
- Whole Genome Sequencing Pipeline (wgs-analysis-pipeline)
- RNA-seq Differential Expression Analysis (rnaseq-differential-expression)