# Compbioagent Explorer

> scRNA-seq Explorer

- Skill: `fridrichmethod/compbioagent-explorer` (Agent Skill)
- Install (CLI): `npx skillmds@latest add fridrichmethod/compbioagent-explorer`
- Raw SKILL.md: https://api.skillmd.com/api/skills/fridrichmethod/compbioagent-explorer/raw
- Safety review: pending
- Works with: Claude Code, Claude.ai, OpenAI Codex
- Category: Coding & Dev Tools
- License: MIT
- Author: FridrichMethod (https://skillmd.com/u/fridrichmethod)
- Updated: 2026-09-17
- Page: https://skillmd.com/skills/fridrichmethod/compbioagent-explorer

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# CompBioAgent (Single-Cell Explorer)

An LLM-powered web application for single-cell RNA-seq data exploration, integrating with CellDepot and Cellxgene VIP.

## When to Use

*   **Interactive Exploration**: When you need to visually explore a dataset without writing code.
*   **Hypothesis Generation**: Quickly checking expression of specific markers across clusters.
*   **Sharing**: Presenting data to non-computational collaborators.

## Core Capabilities

1.  **Natural Language Querying**: "Show me the expression of TP53 in the B-cell cluster."
2.  **Cellxgene Integration**: Leverages robust visualization tools.
3.  **Data Integration**: Connects with CellDepot for dataset retrieval.

## Workflow

1.  **Setup**: `pip install compbioagent`.
2.  **Launch**: `compbioagent start --data ./data.h5ad`.
3.  **Interact**: Open the local URL (e.g., http://localhost:8050) and chat with the agent to generate plots.

## Example Usage

**User**: "Launch the explorer for my kidney dataset."

**Agent Action**:
```bash
compbioagent launch --port 8080 --data ./kidney_atlas.h5ad
```


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