# Review R

> Read-only R code review protocol for `.R` scripts. Checks code quality, reproducibility, domain correctness, tidyverse idioms, and professional standards; produces a report without editing. Use when user says "review this R script", "check the R code", "audit the analysis code", "code review on the R", or when an R file is touched as part of a paper submission. NOT for running the code — pair with `/audit-reproducibility` for numeric verification.

- Skill: `pedrohcgs/review-r` (Agent Skill)
- Install (CLI): `npx skillmds@latest add pedrohcgs/review-r`
- Raw SKILL.md: https://api.skillmd.com/api/skills/pedrohcgs/review-r/raw
- Safety review: pending
- Works with: Claude Code, Claude.ai, OpenAI Codex
- Category: Security
- Author: pedrohcgs (https://skillmd.com/u/pedrohcgs)
- Updated: 2026-09-10
- Page: https://skillmd.com/skills/pedrohcgs/review-r

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# Review R Scripts

Run the comprehensive R code review protocol.

## Steps

1. **Identify scripts to review:**
   - If `$ARGUMENTS` is a specific `.R` filename: review that file only
   - If `$ARGUMENTS` is `LectureN`: review all R scripts matching that lecture
   - If `$ARGUMENTS` is `all`: review all R scripts in `scripts/R/` and `Figures/*/`

2. **For each script, launch the `r-reviewer` agent** with instructions to:
   - Follow the full protocol in the agent instructions
   - Read `.claude/rules/r-code-conventions.md` for current standards
   - Save report to `quality_reports/[script_name]_r_review.md`

3. **After all reviews complete**, present a summary:
   - Total issues found per script
   - Breakdown by severity (Critical / High / Medium / Low)
   - Top 3 most critical issues

4. **IMPORTANT: Do NOT edit any R source files.**
   Only produce reports. Fixes are applied after user review.