# Ember Malware Pipeline Eval

> Evaluates a multi-stage machine learning pipeline for detecting and classifying Windows PE files using static analysis features. It probes the model's ability to perform binary malware detection, hierarchical threat-type classification, family identification, and behavioral categorization. Use when the user wants to benchmark on EMBER, or asks about evaluating this task. Reports accuracy.

- Skill: `qhjqhj00/ember-malware-pipeline-eval` (Agent Skill)
- Install (CLI): `npx skillmds add qhjqhj00/ember-malware-pipeline-eval`
- Raw SKILL.md: https://api.skillmd.com/api/skills/qhjqhj00/ember-malware-pipeline-eval/raw
- Safety review: pending
- Works with: Claude Code, Claude.ai, OpenAI Codex
- Category: DevOps & Infra
- Author: qhjqhj00 (https://skillmd.com/u/qhjqhj00)
- Updated: 2026-09-08
- Page: https://skillmd.com/skills/qhjqhj00/ember-malware-pipeline-eval

---


# ember-malware-pipeline-eval

> Towards an Automated Pipeline for Detecting and Classifying Malware through Machine Learning — Loi et al. (2021) (arXiv:2106.05625, 2021)

## What this evaluates

Evaluates a multi-stage machine learning pipeline for detecting and classifying Windows PE files using static analysis features. It probes the model's ability to perform binary malware detection, hierarchical threat-type classification, family identification, and behavioral categorization.

## Datasets

- **EMBER** — total ?; splits: validation (300000), test (200000)

## Metrics

- `accuracy` **(primary)** — range: [0, 1]
  - Proportion of correctly classified samples out of the total samples evaluated in a specific stage and split.
- `AUC` — range: [0, 1]
  - Area under the Receiver Operating Characteristic curve, measuring the model's discriminative ability across all thresholds.
- `false positives` — range: count
  - Absolute count of benign samples incorrectly predicted as malicious.
- `false negatives` — range: count
  - Absolute count of malicious samples incorrectly predicted as benign.

## Input / output format

**Input**: 1252-dimensional static analysis feature vector extracted from Windows PE files (e.g., byte entropy, printable strings, section entropy, virtual size, data directory sizes, header characteristics).

**Output**: Multi-stage classification labels: (1) binary detection (malicious/benign), (2) threat type, (3) malware family, (4) behavior. Subsequent stages only process samples predicted as malicious in the preceding stage.

## Scoring recipe

```python
def compute_metrics(predictions, gold):
    correct = sum(1 for p, g in zip(predictions, gold) if p == g)
    accuracy = correct / len(gold)
    fp = sum(1 for p, g in zip(predictions, gold) if p == 'malicious' and g == 'benign')
    fn = sum(1 for p, g in zip(predictions, gold) if p == 'benign' and g == 'malicious')
    return {'accuracy': accuracy, 'false_positives': fp, 'false_negatives': fn}
```

## Common pitfalls

- The pipeline is strictly sequential: stages 2-4 are evaluated only on samples predicted as malicious in stage 1, so their metrics are computed on a filtered subset, not the full test set.
- Ground truth labels for threat types and behaviors are noted as potentially flawed or imperfectly defined, which can artificially limit classifier performance.
- Static analysis features struggle with packed or encrypted malware, leading to systematic misclassifications that accuracy alone does not fully capture.

## Evidence (verbatim from paper)

> Table 1: Results of the experimental evaluation carried out on the EMBER dataset reporting accuracy, AUC, false positives, and false negatives metrics both for validation and test phases.

## Citation

```bibtex
@misc{loi2021automated,
  title={Towards an Automated Pipeline for Detecting and Classifying Malware through Machine Learning},
  author={Loi et al. (2021)},
  year={2021},
  note={arXiv:2106.05625}
}
```

- arXiv: 2106.05625