# Gitnexus CLI

> Use when the user needs to run GitNexus CLI commands like analyze/index a repo, check status, clean the index, generate a wiki, or list indexed repos. Examples: "Index this repo", "Reanalyze the codebase", "Generate a wiki"

- Skill: `yanacuti1121/gitnexus-cli` (Agent Skill)
- Install (CLI): `npx skillmds add yanacuti1121/gitnexus-cli`
- Raw SKILL.md: https://api.skillmd.com/api/skills/yanacuti1121/gitnexus-cli/raw
- Safety review: pending
- Works with: Claude Code, Claude.ai, OpenAI Codex
- Category: Coding & Dev Tools
- Author: yanacuti1121 (https://skillmd.com/u/yanacuti1121)
- Updated: 2026-09-09
- Page: https://skillmd.com/skills/yanacuti1121/gitnexus-cli

---


# GitNexus CLI Commands

All commands work via `npx` — no global install required.
**Current version:** 1.6.5

## Commands

### analyze — Build or refresh the index

```bash
npx gitnexus analyze
```

Run from the project root. This parses all source files, builds the knowledge graph, writes it to `.gitnexus/`, and generates CLAUDE.md / AGENTS.md context files.

**v1.6.5:** Incremental indexing by default — only re-processes changed files. Use `--force` to bypass.

| Flag                    | Effect                                                           |
| ----------------------- | ---------------------------------------------------------------- |
| `--force`               | Force full re-index even if up to date                           |
| `--embeddings`          | Enable embedding generation for semantic search (off by default) |
| `--embeddings-url <url>`| HTTP backend for self-hosted/remote embedding endpoint (v1.6.x)  |

**When to run:** First time in a project, after major code changes, or when `gitnexus://repo/{name}/context` reports the index is stale. In Claude Code, a PostToolUse hook runs `analyze` automatically after `git commit` and `git merge`, preserving embeddings if previously generated.

### status — Check index freshness

```bash
npx gitnexus status
```

Shows whether the current repo has a GitNexus index, when it was last updated, and symbol/relationship counts. Use this to check if re-indexing is needed.

### clean — Delete the index

```bash
npx gitnexus clean
```

Deletes the `.gitnexus/` directory and unregisters the repo from the global registry. Use before re-indexing if the index is corrupt or after removing GitNexus from a project.

| Flag      | Effect                                            |
| --------- | ------------------------------------------------- |
| `--force` | Skip confirmation prompt                          |
| `--all`   | Clean all indexed repos, not just the current one |

### wiki — Generate documentation from the graph

```bash
npx gitnexus wiki
```

Generates repository documentation from the knowledge graph using an LLM. Requires an API key (saved to `~/.gitnexus/config.json` on first use).

| Flag                | Effect                                    |
| ------------------- | ----------------------------------------- |
| `--force`           | Force full regeneration                   |
| `--model <model>`   | LLM model (default: minimax/minimax-m2.5) |
| `--base-url <url>`  | LLM API base URL                          |
| `--api-key <key>`   | LLM API key                               |
| `--concurrency <n>` | Parallel LLM calls (default: 3)           |
| `--gist`            | Publish wiki as a public GitHub Gist      |

### list — Show all indexed repos

```bash
npx gitnexus list
```

Lists all repositories registered in `~/.gitnexus/registry.json`. The MCP `list_repos` tool provides the same information.

## After Indexing

1. **Read `gitnexus://repo/{name}/context`** to verify the index loaded
2. Use the other GitNexus skills (`exploring`, `debugging`, `impact-analysis`, `refactoring`) for your task

## Troubleshooting

- **"Not inside a git repository"**: Run from a directory inside a git repo
- **Index is stale after re-analyzing**: Restart Claude Code to reload the MCP server
- **Embeddings slow**: Omit `--embeddings` (it's off by default) or set `OPENAI_API_KEY` for faster API-based embedding
- **v1.6.0 install failure**: Early v1.6.0 had `gitnexus-shared` dependency issues — use v1.6.1+ (`npx gitnexus@latest`)