# Biological Function Mapping

> Map technical functions to biological systems. Orchestrates problem-biologization → organism-discovery → functional-model-biology.

- Skill: `yogsoth-ai/biological-function-mapping-2` (Agent Skill)
- Install (CLI): `npx skillmds@latest add yogsoth-ai/biological-function-mapping-2`
- Raw SKILL.md: https://api.skillmd.com/api/skills/yogsoth-ai/biological-function-mapping-2/raw
- Safety review: pending
- Works with: Claude Code, Claude.ai, OpenAI Codex
- Category: Product & Planning
- Author: yogsoth-ai (https://skillmd.com/u/yogsoth-ai)
- Updated: 2026-09-21
- Page: https://skillmd.com/skills/yogsoth-ai/biological-function-mapping-2

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# Biological Function Mapping

Map technical functions to biological systems via biologize→discover→model pipeline.

## Stages

### Stage 1: Problem Biologization

Translate the technical problem into a biological function need statement using problem-biologization SOP. Frame in terms of what function nature must achieve, not how.

### Stage 2: Organism Discovery

Search for organisms that solve the biologized problem using organism-discovery SOP. Identify champion organisms across multiple phyla/kingdoms for diversity.

### Stage 3: Functional Modeling

For each promising organism, build a functional model (energy/matter/information flows) using functional-model-biology SOP. Identify the mechanism that achieves the target function.

## Minimum Yield

| Metric | Floor |
|--------|-------|
| Biological function statements | ≥2 |
| Organisms discovered | ≥5 |
| Biological systems mapped to technical functions | ≥3 |
| Functional models completed | ≥3 |

## Available SOPs

| SOP | Role |
|-----|------|
| problem-biologization | Stage 1 — translate technical→biological |
| organism-discovery | Stage 2 — find champion organisms |
| functional-model-biology | Stage 3 — build functional models |
| biological-strategy-extraction | Post — extract transferable strategies |
| web-search | Support — search for biological solutions |
| paper-overview | Support — find academic biology sources |