AI & ML

gptomics Bundle

Build weighted gene co-expression networks to identify modules of co-regulated genes, relate them to phenotypes, and find hub genes using WGCNA, hdWGCNA, MEGENA, CEMiTool, and Gaussian graphical models. Covers signed-network choice, soft-threshold selection, module preservation, and the marginal-vs-partial-correlation distinction. Use when finding co-expression modules, identifying hub genes, relating gene networks to clinical or experimental traits, or building single-cell co-expression networks. For directed TF-target inference see scenic-regulons and grn-inference; for condition rewiring see differential-networks.

gptomics Bundle

Infers person-to-person transmission from pathogen genomes using outbreaker2, TransPhylo, phybreak, BadTrIP, SCOTTI, BEASTLIER, and SNP-distance / cluster-picker approaches (HIV-TRACE for HIV; transcluster). Defines outbreak clusters using pathogen-specific SNP thresholds (NOT a universal cutoff -- TB <=12 SNPs; MRSA <=15; C. difficile <=2; Klebsiella <=21), models within-host diversity and transmission bottlenecks, integrates contact-tracing data, distinguishes generation from serial interval, and attributes source via Bayesian source attribution (islandR). Use when investigating outbreaks for who-infected-whom, defining SNP-cluster outbreak definitions, accounting for unsampled intermediates, choosing between outbreaker2 (rich epi data) and TransPhylo (genomic-only after a dated phylogeny), running source attribution between host populations, calling HIV-TRACE thresholds appropriate to the local subtype, or distinguishing recent transmission from reactivation in TB or chronic HIV.

g1joshi Skill

Hugging Face transformers library and hub. Use for NLP models.

oimiragieo Bundle

GitHub API operations - repositories, issues, pull requests, actions, code security, discussions, gists, and more. Use for GitHub-related tasks like managing PRs, issues, searching code, and monitoring workflows.

oimiragieo Bundle

Autonomous iteration loop with dual-mode support. Standalone mode uses Stop hooks (RALPH_ACTIVE=1). Multi-agent mode uses router-managed iteration. Never traps the host/router session.

ariffazil Bundle

Grok documentation and configuration help. Use when users ask about setup, configuration, MCP servers, authentication, skills, slash commands, keyboard shortcuts, or any Grok feature. Also use proactively when you detect a user is having trouble with setup or onboarding.

ariffazil Bundle

Scheduled substrate process for memory consolidation, threat rehearsal, emotional defusing, creative recombination, and housekeeping. Maps to L1-L5 only (L6 sovereign). Cron-driven Python, LLM only for cross-domain synthesis. Use when memory drift, dedup, or constitutional recalibration is needed.

ariffazil Bundle

How to use the image_gen and image_edit tool calls in Grok Build: when to build a visual with code instead of generating it, prompt-craft, reference-first handling of real people, factual grounding, and asset-consistency. Load this whenever generating or editing an image is on the table, i.e. when an image_gen or image_edit call is being considered or about to be made. Tool-usage-driven, not triggered by a user merely mentioning images.

ariffazil Bundle

OpenClaw edge agent bridge — operational triage, doctor, restart, and A2A bridge routing for the federation edge (Telegram surface). USE WHEN: "openclaw unhealthy", "gateway down", "edge bot not responding", "a2a bridge disconnected", "watchdog tripped", "openclaw doctor", "openclaw restart". NOT for token/security audit — use FORGE-telegram-audit.

oimiragieo Bundle

Statistical models library for Python. Use when you need specific model classes (OLS, GLM, mixed models, ARIMA) with detailed diagnostics, residuals, and inference. Best for econometrics, time series, rigorous inference with coefficient tables. For guided statistical test selection with APA reporting use statistical-analysis.

oimiragieo Bundle

Background orchestrator that drains the system-wide cron-actions-queue.jsonl queue safely, preventing LLM context pollution in the primary router.

oimiragieo Bundle

Two-agent cleanup pattern. Implementer works freely, then a dedicated cleanup agent removes unused imports, console.logs, commented-out code, dead code, and formatting issues. Produces a diff of what was cleaned.

oimiragieo Bundle

Hugging Face Hub operations, model inference, dataset management, PEFT/LoRA fine-tuning, and Spaces deployment via MCP tools and Python APIs

oimiragieo Bundle

Orchestrate multi-LLM parallel debate and synthesis. Dispatches prompts to available omega CLI wrappers in parallel, collects independent responses, runs anonymized peer review ranking, and synthesizes via a chairman model. Supports collaboration templates, idle watchdog, inter-agent messaging, worktree isolation, and multi-turn sessions. No server required.

oimiragieo Bundle

Guide developers in creating Model Context Protocol (MCP) servers. Use for building MCP tools that enable LLMs to interact with external services. Covers TypeScript (primary) and Python FastMCP (secondary), tool annotations, Zod/Pydantic validation, and evaluation question creation.

g1joshi Skill

ArangoDB multi-model database with graphs. Use for multi-model workloads.

ariffazil Skill

Probe all FI coder CLIs live (qwen/kimi/opencode/codex/claude/grok/gemini) with a minimal falsification prompt and report the mesh matrix. Use when Arif says 'mesh check', 'test all coder CLIs', 'FI mesh health', 'are all harnesses alive', or before/after cross-FI plumbing work.

ariffazil Bundle

Build and audit interactive MCP Apps, UI resources, sandbox messaging, and CSP-bound host integration

ariffazil Skill

Use when mapping every callable in the federation or planning boot-time call contracts between FI harnesses. Use when mapping every callable in the federation or planning boot-time call contracts between FI harnesses. Boot-time call contract: how to invoke every FI harness, organ MCP, A2A target, and FED socket. AAA 3-layer cards = directory (who). This skill = telephone (how). Load on session start.

ariffazil Bundle

[QwenCloud] Generate text, have conversations, write code, reason, and call functions with Qwen models. TRIGGER when: user asks to chat with Qwen, generate text, write code with Qwen, use Qwen function calling, or explicitly invokes this skill by name (e.g. use qwencloud-text). DO NOT TRIGGER when: general coding questions without Qwen, non-Qwen AI model usage (OpenAI, Gemini, etc.), image/video understanding (use qwencloud-vision), image/video/audio generation.

oimiragieo Bundle

Machine learning in Python with scikit-learn. Use when working with supervised learning (classification, regression), unsupervised learning (clustering, dimensionality reduction), model evaluation, hyperparameter tuning, preprocessing, or building ML pipelines. Provides comprehensive reference documentation for algorithms, preprocessing techniques, pipelines, and best practices.

oimiragieo Bundle

This skill should be used when working with pre-trained transformer models for natural language processing, computer vision, audio, or multimodal tasks. Use for text generation, classification, question answering, translation, summarization, image classification, object detection, speech recognition, and fine-tuning models on custom datasets.

ariffazil Skill

Orthogonal axis routing for Qwen Code (FI-003). Given an intent, classify it across 9 orthogonal axes (organ, action, mode, tier, layer, surface, scope, time, reversibility) and route to the right organ MCP server. Load when you must pick between equally-valid tools.

ariffazil Skill

[QwenCloud] Manage account auth and query usage/billing. Use for: login, logout, check usage, view billing, free tier quota, coding plan status, pay-as-you-go costs. Skip for: model browsing, non-account tasks.

ariffazil Bundle

Standard procedure for registering a new agent in the AAA federation. Creates agent identity directory, agent card (v2.0.0 schema), registry entry, and SOUL.md. Updated 2026-08-03: canonical card locations vary by agent class — identity lanes at agent-cards/identity/, organs at agent-cards/{pillars,organs}/, FI agents (warga-aaa forge instruments, FI-001 to FI-008) at agents/_external/<id>/, other internal agents at agents/<id>/. The 2026-07-01 single-path note is now obsolete.

ariffazil Bundle

Generate, monitor, and download MiniMax-H3 videos through the mmx CLI. Use for H3 text-to-video, first/last-frame video, multimodal reference image/video/audio generation, H3 prompt improvement, media preflight, Pay-as-you-go API key selection, task waiting, downloads, and H3 failure handling.

ariffazil Skill

Route all Malaysia macro/policy/energy/corporate claims through primary government/financial sources using EXISTING federation tools. NO new MCP servers. Hard F2 provenance law for any MY figure.

g1joshi Skill

TypeScript static typing with interfaces, generics, decorators, and type inference. Use for .ts files.

ariffazil Skill

Orthogonal axis routing for Claude Code (FI-002). Given an intent, classify it across 9 orthogonal axes (organ, action, mode, tier, layer, surface, scope, time, reversibility) and route to the right organ MCP server. Load when you must pick between equally-valid tools.

ariffazil Skill

Generate images, videos, TTS, voice clone, and music via MiniMax MCP server. Use when user asks to "draw", "generate image", "create picture", "make a photo", "text to image", "image generation".

ariffazil Skill

Standardized JSON-RPC state machine, task queue delegation, and precondition contract manager for cross-vendor multi-agent swarms.

ariffazil Bundle

Governed triage workflow for GitHub issues across the arifOS federation Use this skill whenever a new issue is opened, an issue lacks labels, or an agent needs to determine if it belongs in a different repo or federation organ. This skill classifies, routes, labels, and drafts responses — but never closes, never assigns to Arif, and never promises code fixes without sovereign approval.

ariffazil Bundle

Closed-loop visual governance with W3 tri-witness consensus — render, screenshot, validate, iterate, seal. Includes MCP App / ChatGPT host-surface QA.

ariffazil Skill

Documents Qwen Token Plan Harness tools (web search, code interpreter, web scraping, reverse image search, text-to-image search) that are built into supported models. Activates when the user asks for real-time web info, code execution in a sandbox, or image search while using a Token Plan model.

oimiragieo Bundle

Look up current research information using Perplexity Sonar Pro Search or Sonar Reasoning Pro models through OpenRouter. Automatically selects the best model based on query complexity. Search academic papers, recent studies, technical documentation, and general research information with citations.

oimiragieo Bundle

Living catalogue of 7 known hazard entries (SE-01 through SE-07) specific to agent-studio: Windows backslash paths, prototype pollution, hook exit codes, async swallowing, ReDoS in glob-to-regex, DST arithmetic, array mutation during iteration. Each entry: symptom, root cause, fix, test assertion.