DevOps & Infra

holobiomicslab Skill

Use when you need to deploy a complex multi-language pipeline (e.g., HiC-Pro) that requires Python >3.7 libraries (pysam, bx-python, numpy, scipy), R packages (ggplot2, RColorBrewer), and compiled tool binaries (bowtie2, samtools >=1.

holobiomicslab Skill

Use when when deploying a complex bioinformatics pipeline (e.g., HiC-Pro) that depends on multiple external tools with version constraints (samtools ≥1.9, bowtie2, R packages, Python libraries) and you need to verify their availability and configure their paths before running the analysis.

holobiomicslab Skill

Use when when you have mass spectrometry data stored in a database or non-mzML file format and need to integrate it into the pymzML pipeline without converting to mzML. Use this skill when FileInterface does not natively recognize your file extension and you want to avoid data conversion overhead.

holobiomicslab Skill

Use when when setting up a multi-stage bioinformatics workflow (e.g., ENPKG) that calls external tools (MZmine, Sirius, SPARQL engines) and depends on specific Python libraries; when reproducibility across team members or cloud infrastructure is required;

holobiomicslab Skill

Use when when you need to quantify and document the computational cost of a multi-stage analysis pipeline (such as MetaboDirect) across varying input sizes (e.

holobiomicslab Skill

Use when after building and starting a Dockerized TensorFlow Serving instance (via `make server-compose` or equivalent) to validate that the model has the expected input layer names ('input_2048' and 'input_4096') and output layer name ('output') before routing live inference traffic through the.

holobiomicslab Skill

Use when when you have cloned or accessed the Reverse_metabolomics_library_generation repository and need to verify that the Nextflow workflow is properly configured, executable, and produces expected spectral library outputs.

holobiomicslab Skill

Use when you have a metabolomics data matrix with missing-not-at-random (MNAR) left-censored values and need to apply multiple imputation methods to the same data in a standardized way, compare their outputs, or integrate the imputation step into a larger pre-processing pipeline.

holobiomicslab Skill

Use when you have a Qt5-based C++ GUI application source tree (e.g., Maven GUI) that must be compiled and packaged for end-user distribution across macOS and Windows platforms, especially when automated builds are managed by CI/CD services (AppVeyor, Travis).

holobiomicslab Skill

Use when when you need to deploy a Java web application packaged in a Tomcat Docker container to a specified HTTP endpoint, and must verify that the container starts successfully, the Tomcat server initializes, and the application becomes accessible at the mapped host port before proceeding with.

holobiomicslab Skill

Use when you have a raw metabolite abundance matrix (e.g., from MSPrep or another LC-MS/MS pipeline) with many features and samples, and you observe that a substantial fraction of metabolites are missing (NA or zero-valued) across replicates.

diegosouzapw Bundle

Neon Serverless Postgres workflow skill. Use this skill when the user needs Neon is a serverless Postgres platform that separates compute and storage to offer autoscaling, branching, instant restore, and scale-to-zero. It's fully compatible with Postgres and works with any language, framework, or ORM that supports Postgres and the operator should preserve the upstream workflow, copied support files, and provenance before merging or handing off.

diegosouzapw Bundle

AWS Serverless workflow skill. Use this skill when the user needs Specialized skill for building production-ready serverless and the operator should preserve the upstream workflow, copied support files, and provenance before merging or handing off.

diegosouzapw Bundle

Azure Machine Learning SDK v2 for Python workflow skill. Use this skill when the user needs Azure Machine Learning SDK v2 for Python. Use for ML workspaces, jobs, models, datasets, compute, and pipelines and the operator should preserve the upstream workflow, copied support files, and provenance before merging or handing off.

diegosouzapw Bundle

E2E Testing Workflow workflow skill. Use this skill when the user needs End-to-end testing workflow with Playwright for browser automation, visual regression, cross-browser testing, and CI/CD integration and the operator should preserve the upstream workflow, copied support files, and provenance before merging or handing off.

diegosouzapw Bundle

Netlify Deployment Skill workflow skill. Use this skill when the user needs Deploy web projects to Netlify using the Netlify CLI (npx netlify). Use when the user asks to deploy, host, publish, or link a site/repo on Netlify, including preview and production deploys. Do NOT use for deploying to Vercel, Cloudflare, or Render (use their respective skills) and the operator should preserve the upstream workflow, copied support files, and provenance before merging or handing off.

diegosouzapw Bundle

Social Selling Skill workflow skill. Use this skill when the user needs When the user wants to sell through social media, optimize LinkedIn for sales, build DM sequences, or convert content engagement into pipeline. Also use when the user mentions 'social selling,' 'LinkedIn selling,' 'LinkedIn DMs,' 'social prospecting,' 'LinkedIn Sales Navigator,' 'DM sequences,' 'LinkedIn outreach,' 'social pipeline,' or 'LinkedIn optimization.' This skill covers social selling strategy from profile optimization through DM-to-deal conversion. Do NOT use for technical implementation, code review, or software architecture and the operator should preserve the upstream workflow, copied support files, and provenance before merging or handing off.

diegosouzapw Bundle

test-automator workflow skill. Use this skill when the user needs Master AI-powered test automation with modern frameworks, self-healing tests, and comprehensive quality engineering. Build scalable testing strategies with advanced CI/CD integration and the operator should preserve the upstream workflow, copied support files, and provenance before merging or handing off.

diegosouzapw Bundle

Azure AI Hosted Agents (Python) workflow skill. Use this skill when the user needs Build container-based Foundry Agents with Azure AI Projects SDK (ImageBasedHostedAgentDefinition). Use when creating hosted agents with custom container images in Azure AI Foundry and the operator should preserve the upstream workflow, copied support files, and provenance before merging or handing off.

diegosouzapw Bundle

AMAZON ALEXA — Voz Inteligente com Claude workflow skill. Use this skill when the user needs Integracao completa com Amazon Alexa para criar skills de voz inteligentes, transformar Alexa em assistente com Claude como cerebro (projeto Auri) e integrar com AWS ecosystem (Lambda, DynamoDB, Polly, Transcribe, Lex, Smart Home) and the operator should preserve the upstream workflow, copied support files, and provenance before merging or handing off.

diegosouzapw Bundle

Azure Cosmos DB SDK for Python workflow skill. Use this skill when the user needs Azure Cosmos DB SDK for Python (NoSQL API). Use for document CRUD, queries, containers, and globally distributed data and the operator should preserve the upstream workflow, copied support files, and provenance before merging or handing off.

diegosouzapw Bundle

@azure/cosmos (TypeScript/JavaScript) workflow skill. Use this skill when the user needs Azure Cosmos DB JavaScript/TypeScript SDK (@azure/cosmos) for data plane operations. Use for CRUD operations on documents, queries, bulk operations, and container management and the operator should preserve the upstream workflow, copied support files, and provenance before merging or handing off.

diegosouzapw Bundle

cdk-patterns workflow skill. Use this skill when the user needs Common AWS CDK patterns and constructs for building cloud infrastructure with TypeScript, Python, or Java. Use when designing reusable CDK stacks and L3 constructs and the operator should preserve the upstream workflow, copied support files, and provenance before merging or handing off.

diegosouzapw Bundle

Cloud/DevOps Workflow Bundle workflow skill. Use this skill when the user needs Cloud infrastructure and DevOps workflow covering AWS, Azure, GCP, Kubernetes, Terraform, CI/CD, monitoring, and cloud-native development and the operator should preserve the upstream workflow, copied support files, and provenance before merging or handing off.

diegosouzapw Bundle

EarLLM One — Build & Maintain workflow skill. Use this skill when the user needs Build, maintain, and extend the EarLLM One Android project — a Kotlin/Compose app that connects Bluetooth earbuds to an LLM via voice pipeline and the operator should preserve the upstream workflow, copied support files, and provenance before merging or handing off.

diegosouzapw Bundle

Expo Deployment workflow skill. Use this skill when the user needs Deploy Expo apps to production and the operator should preserve the upstream workflow, copied support files, and provenance before merging or handing off.

diegosouzapw Bundle

Cloud Cost Optimization workflow skill. Use this skill when the user needs Strategies and patterns for optimizing cloud costs across AWS, Azure, and GCP and the operator should preserve the upstream workflow, copied support files, and provenance before merging or handing off.

diegosouzapw Bundle

GitHub Automation via Rube MCP workflow skill. Use this skill when the user needs Automate GitHub repositories, issues, pull requests, branches, CI/CD, and permissions via Rube MCP (Composio). Manage code workflows, review PRs, search code, and handle deployments programmatically and the operator should preserve the upstream workflow, copied support files, and provenance before merging or handing off.

diegosouzapw Bundle

kubernetes-architect workflow skill. Use this skill when the user needs Expert Kubernetes architect specializing in cloud-native infrastructure, advanced GitOps workflows (ArgoCD/Flux), and enterprise container orchestration and the operator should preserve the upstream workflow, copied support files, and provenance before merging or handing off.

diegosouzapw Bundle

Mise Configurator workflow skill. Use this skill when the user needs Generate production-ready mise.toml setups for local development, CI/CD pipelines, and toolchain standardization and the operator should preserve the upstream workflow, copied support files, and provenance before merging or handing off.

diegosouzapw Bundle

Odoo Backup Strategy workflow skill. Use this skill when the user needs Complete Odoo backup and restore strategy: database dumps, filestore backup, automated scheduling, cloud storage upload, and tested restore procedures and the operator should preserve the upstream workflow, copied support files, and provenance before merging or handing off.

diegosouzapw Bundle

terraform-specialist workflow skill. Use this skill when the user needs Expert Terraform/OpenTofu specialist mastering advanced IaC automation, state management, and enterprise infrastructure patterns and the operator should preserve the upstream workflow, copied support files, and provenance before merging or handing off.

diegosouzapw Bundle

Apify Actorization workflow skill. Use this skill when the user needs Actorization converts existing software into reusable serverless applications compatible with the Apify platform. Actors are programs packaged as Docker images that accept well-defined JSON input, perform an action, and optionally produce structured JSON output and the operator should preserve the upstream workflow, copied support files, and provenance before merging or handing off.

diegosouzapw Bundle

AWS Cost Optimizer workflow skill. Use this skill when the user needs Comprehensive AWS cost analysis and optimization recommendations using AWS CLI and Cost Explorer and the operator should preserve the upstream workflow, copied support files, and provenance before merging or handing off.

diegosouzapw Bundle

AWS Security Audit workflow skill. Use this skill when the user needs Comprehensive AWS security posture assessment using AWS CLI and security best practices and the operator should preserve the upstream workflow, copied support files, and provenance before merging or handing off.

diegosouzapw Bundle

@azure/ai-voicelive (JavaScript/TypeScript) workflow skill. Use this skill when the user needs Azure AI Voice Live SDK for JavaScript/TypeScript. Build real-time voice AI applications with bidirectional WebSocket communication and the operator should preserve the upstream workflow, copied support files, and provenance before merging or handing off.