DevOps & Infra

tools-only Bundle

Executes Azure deployments using generated Bicep templates. Runs deploy.ps1 scripts, performs what-if analysis, and manages deployment lifecycle. Step 6 of the 7-step agentic workflow.

tools-only Bundle

Step 3 - Design Artifacts. Generates architecture diagrams and Architecture Decision Records (ADRs) for Azure infrastructure. Uses azure-diagrams skill for visual documentation and azure-adr skill for formal decision records. Optional step - users can skip to Implementation Planning.

tools-only Bundle

Step 3 - Design Artifacts. Generates architecture diagrams and Architecture Decision Records (ADRs) for Azure infrastructure. Uses azure-diagrams skill for visual documentation and azure-adr skill for formal decision records. Optional step - users can skip to Implementation Planning.

tools-only Bundle

End-to-end alternative splicing analysis from FASTQ to differential splicing results. Aligns with STAR 2-pass mode, performs junction QC, runs rMATS-turbo for differential analysis, and generates sashimi visualizations. Use when performing comprehensive splicing analysis from raw RNA-seq data.

tools-only Bundle

- This project uses CI/CD that is ran on GitHub Actions. When pull requests are merged into the default branch, that CI/CD would create a new release and update a few files. It's vital to always pull the latest default branch before starting working on the new changes.

tools-only Bundle

Used by /flow-next:prime to scan for environment setup, .env templates, Docker, and devcontainer configuration. Do not invoke directly.

tools-only Bundle

Defines canonical artifact templates, H2 structures, and documentation styling rules for agent outputs (Steps 1-7); use for artifact generation, formatting, and template compliance.

tools-only Bundle

Create GitHub Releases with AI-analyzed changelogs for every calendar day with commits on origin/main. Uses the same analyze → AI-categorize → format pipeline as /create-merge-request-changelog for rich, structured output. Idempotent: skips days that are already up to date, updates releases where new commits have been added. Automatically invoked when command is run; accepts optional --start-date, --end-date, --branch, --dry-run arguments.

tools-only Bundle

Provides AWS messaging patterns using AWS SDK for Java 2.x for SQS queues and SNS topics. Handles sending/receiving messages, FIFO queues, DLQ, subscriptions, and pub/sub patterns. Use when implementing messaging with SQS or SNS.

tools-only Bundle

Diagnoses dbt Cloud/platform job failures by analyzing run logs, querying the Admin API, reviewing git history, and investigating data issues. Use when a dbt Cloud/platform job fails and you need to diagnose the root cause, especially when error messages are unclear or when intermittent failures occur. Do not use for local dbt development errors.

tools-only Bundle

ACTIVATE THIS SKILL FOR ANY SHELL COMMAND OR FILE READ. Check curl, wget, rm, sudo, apt, dpkg, chmod, dd, format, powershell, bash, sh. Check pipe patterns like | sh or | bash. Check shell wrappers like bash -c, xargs, find -exec. Check cloud CLI (aws, gcloud, kubectl, terraform). Check when user says sysadmin told me, Stack Overflow says, is this safe, can I run. Block reading of .env, .ssh, .aws, and credential files. This skill blocks dangerous commands and warns on risky ones. ALWAYS apply the safety protocol from this document before responding about any command.

tools-only Bundle

Comprehensive Salesforce DevOps automation using sf CLI v2. Use when deploying metadata, managing scratch orgs, setting up CI/CD pipelines, or troubleshooting deployment errors.

tools-only Bundle

Create a production-ready Google Cloud agent using ADK and Agent Starter...

tools-only Bundle

Interactive diagnostic agent that guides users through Azure resource health assessment, issue identification, and remediation planning. Uses approval-first execution for safety, analyzes single resources, and saves reports to agent-output/{project}/.

tools-only Bundle

End-to-end eDNA metabarcoding from raw amplicons to community ecology. Covers QC, primer removal, denoising with OBITools3 or DADA2, contamination filtering, taxonomy assignment, Hill number diversity, and constrained ordination. Use when processing environmental DNA samples for biodiversity assessment or ecological surveys.

tools-only Bundle

Comprehensive Salesforce DevOps automation using sf CLI v2. Use when deploying metadata, managing scratch orgs, setting up CI/CD pipelines, or troubleshooting deployment errors.

tools-only Bundle

Generate and prioritize US equity long-side edge research tickets from EOD observations, then export pipeline-ready candidate specs for trade-strategy-pipeline Phase I. Use when users ask to turn hypotheses/anomalies into reproducible research tickets, convert validated ideas into `strategy.yaml` + `metadata.json`, or preflight-check interface compatibility (`edge-finder-candidate/v1`) before running pipeline backtests.

tools-only Bundle

End-to-end genome annotation pipeline from assembled contigs to functional annotation, covering repeat masking, gene prediction, and functional assignment for both prokaryotic and eukaryotic genomes. Use when annotating a newly assembled genome from scratch.

tools-only Bundle

End-to-end copy number variant detection workflow from BAM files. Covers CNVkit analysis for exome/targeted sequencing with visualization and annotation. Use when detecting copy number alterations from sequencing data.

tools-only Bundle

Used by /flow-next:prime to scan for CI/CD, PR templates, issue templates, and workflow automation. Do not invoke directly.

tools-only Bundle

Researches and captures Azure infrastructure project requirements

tools-only Bundle

Researches and captures Azure infrastructure project requirements

tools-only Bundle

End-to-end single-cell RNA-seq workflow from 10X Genomics data to annotated cell types. Covers QC, normalization, clustering, marker detection, and cell type annotation. Use when analyzing single-cell RNA-seq data.

tools-only Bundle

Interactive diagnostic agent that guides users through Azure resource health assessment, issue identification, and remediation planning. Uses approval-first execution for safety, analyzes single resources, and saves reports to agent-output/{project}/.

tools-only Bundle

Interactive diagnostic agent that guides users through Azure resource health assessment, issue identification, and remediation planning. Uses approval-first execution for safety, analyzes single resources, and saves reports to agent-output/{project}/.

tools-only Bundle

Provides AWS CloudFormation patterns for Amazon Bedrock resources including agents, knowledge bases, data sources, guardrails, prompts, flows, and inference profiles. Use when creating Bedrock agents with action groups, implementing RAG with knowledge bases, configuring vector stores, setting up content moderation guardrails, managing prompts, orchestrating workflows with flows, and configuring inference profiles for model optimization.

tools-only Bundle

Master orchestrator for the 7-step Azure infrastructure workflow. Coordinates specialized agents (Requirements, Architect, Design, Bicep Plan, Bicep Code, Deploy) through the complete development cycle with mandatory human approval gates. Maintains context efficiency by delegating to subagents and preserves human-in-the-loop control at critical decision points.

tools-only Bundle

Master orchestrator for the 7-step Azure infrastructure workflow. Coordinates specialized agents (Requirements, Architect, Design, Bicep Plan, Bicep Code, Deploy) through the complete development cycle with mandatory human approval gates. Maintains context efficiency by delegating to subagents and preserves human-in-the-loop control at critical decision points.

tools-only Bundle

Provides AWS CloudFormation patterns for Lambda functions, layers, event sources, and integrations. Use when creating Lambda functions with CloudFormation, configuring API Gateway, Step Functions, EventBridge, SQS, SNS triggers, and implementing template structure with Parameters, Outputs, Mappings, Conditions, cross-stack references, and best practices for cold start optimization.

tools-only Bundle

Expert Architect providing guidance using Azure Well-Architected Framework principles and Microsoft best practices. Evaluates all decisions against WAF pillars (Security, Reliability, Performance, Cost, Operations) with Microsoft documentation lookups. Automatically generates cost estimates using Azure Pricing MCP tools. Saves WAF assessments and cost estimates to markdown documentation files.

tools-only Bundle

Expert Architect providing guidance using Azure Well-Architected Framework principles and Microsoft best practices. Evaluates all decisions against WAF pillars (Security, Reliability, Performance, Cost, Operations) with Microsoft documentation lookups. Automatically generates cost estimates using Azure Pricing MCP tools. Saves WAF assessments and cost estimates to markdown documentation files.

tools-only Bundle

Master orchestrator for the 7-step Azure infrastructure workflow. Coordinates specialized agents (Requirements, Architect, Design, Bicep Plan, Bicep Code, Deploy) through the complete development cycle with mandatory human approval gates. Maintains context efficiency by delegating to subagents and preserves human-in-the-loop control at critical decision points.

tools-only Bundle

Master orchestrator for the 7-step Azure infrastructure workflow. Coordinates specialized agents (Requirements, Architect, Design, Bicep Plan, Bicep Code, Deploy) through the complete development cycle with mandatory human approval gates. Maintains context efficiency by delegating to subagents and preserves human-in-the-loop control at critical decision points.

tools-only Bundle

Master orchestrator for the 7-step Azure infrastructure workflow. Coordinates specialized agents (Requirements, Architect, Design, Bicep Plan, Bicep Code, Deploy) through the complete development cycle with mandatory human approval gates. Maintains context efficiency by delegating to subagents and preserves human-in-the-loop control at critical decision points.

tools-only Bundle

Provides AWS Lambda integration patterns for TypeScript with cold start optimization. Use when deploying TypeScript functions to AWS Lambda, choosing between NestJS framework and raw TypeScript approaches, optimizing cold starts, configuring API Gateway or ALB integration, or implementing serverless TypeScript applications. Triggers include "create lambda typescript", "deploy typescript lambda", "nestjs lambda aws", "raw typescript lambda", "aws lambda typescript performance".

tools-only Bundle

Provides AWS CloudFormation patterns for Auto Scaling including EC2, ECS, and Lambda. Use when creating Auto Scaling groups, launch configurations, launch templates, scaling policies, lifecycle hooks, and predictive scaling. Covers template structure with Parameters, Outputs, Mappings, Conditions, cross-stack references, and best practices for high availability and cost optimization.