Docs & Writing

26zl Bundle

Build collaborative forensic incident timelines using Timesketch to ingest, normalize, and analyze multi-source event data for attack chain reconstruction and investigation documentation.

fridrichmethod Skill

Selecting a reference manager and applying citation styles. Compares Zotero, Mendeley, EndNote, Paperpile; covers APA/Vancouver/ACS/Nature styles, DOI management, citation tracking, and Word/Google Docs/LaTeX integration. Use when setting up a reference workflow or fixing citation formatting.

fridrichmethod Bundle

Extracts per-cytosine methylation calls from aligned bisulfite/EM-seq reads with bismark_methylation_extractor (Bismark BAM) or the aligner-agnostic MethylDackel/BISCUIT (bwa-meth BAM), producing the beta value M/(M+U) as a coverage file, bedGraph, or genome-wide cytosine report across CpG/CHG/CHH context. Covers conversion-rate QC as the first gate, the 5mC vs 5hmC summed caveat, variant-aware calling so a C/T SNP does not masquerade as unmethylation, paired-end --no_overlap double-counting, symmetric CpG dyad collapse, and the 0-based vs 1-based coordinate trap. Use when extracting methylation levels from a bisulfite/EM-seq alignment, choosing an extractor for a non-Bismark BAM, QC-ing conversion efficiency, or producing coverage/cytosine-report input for testing. For long-read MM/ML modification calling see long-read-sequencing/nanopore-methylation; for the upstream BAM see bismark-alignment; for per-CpG statistics see differential-cpg-testing.

fridrichmethod Bundle

Turns shotgun classifier output into a defensible abundance table with Bracken Bayesian re-estimation, then compositional treatment (CLR, zero handling), library-size normalization, reference-frame differential abundance, and optional absolute quantification. Covers why a relative-abundance change is not a change, why Bracken read fractions and MetaPhlAn percentages are different physical quantities, the silent -r read-length bias, the genome-size confound no library-size method fixes, and the rarefaction debate. Use when estimating species abundance from a Kraken2 report, normalizing a community count table, choosing a compositional transform, or converting relative to absolute load. For classification see kraken-classification; for diversity/ordination/DA mechanics see metagenome-visualization.

fridrichmethod Bundle

Predicts community functional POTENTIAL from 16S/ITS amplicon ASVs with PICRUSt2 (or q2-picrust2) by phylogenetic interpolation of reference-genome gene content - EPA-ng placement, gappa, castor hidden-state prediction of KO/EC/Pfam copy number, 16S copy-number normalization, and MinPath MetaCyc/KEGG pathways - gated by the NSTI quality index. Covers why predicted function is taxonomy re-encoded (never measured gene content and never activity), the mandatory NSTI report (--max_nsti 2 silently drops novel ASVs), why accuracy IS reference coverage (gut Spearman ~0.8, soil/marine collapse), the circularity trap, and Tax4Fun2/FAPROTAX/BugBase alternatives. Use when inferring KO/EC/MetaCyc potential from an ASV table, gating on NSTI, or choosing a prediction method. For MEASURED shotgun function see metagenomics/functional-profiling; for enrichment of KO lists see pathway-analysis/go-enrichment; for DA of predicted tables see differential-abundance.

26zl Bundle

Implements an integrated incident ticketing system connecting SIEM alerts to ServiceNow, Jira, or TheHive for structured incident tracking, SLA management, escalation workflows, and compliance documentation. Use when SOC teams need formalized incident lifecycle management with automated ticket creation, assignment routing, and resolution tracking.

paulasilvatech Skill

Generate a technology stack blueprint by analyzing codebase languages, frameworks, dependencies, versions, licenses, conventions, usage patterns, tooling, infrastructure, and diagrams. Use this skill when the user asks for a stack blueprint, architecture technology inventory, implementation-ready tech map, dependency and convention documentation, or guided development baseline.

paulasilvatech Skill

Generate technology-agnostic blueprints for comprehensive copilot-instructions.md files that make GitHub Copilot follow exact project versions, architecture, code quality, documentation, testing, and versioning conventions discovered from the codebase. Use this skill when the user asks for configuration variables, wants to create copilot-instructions.md, or needs repository-specific GitHub Copilot coding guidance.

paulasilvatech Skill

Create an Architectural Decision Record (ADR) as a structured Markdown document with front matter, coded consequences, alternatives, implementation notes, and references. Use when the user asks to document an architecture decision, create an ADR, capture alternatives and trade-offs, or save a decision under docs/adr.

paulasilvatech Skill

Generate complete production-ready application code from an OpenAPI specification, including project structure, models, controllers, services, repositories, validation, error handling, tests, documentation, and environment files. Use this skill when the user asks to generate an application from an OpenAPI spec, scaffold an API server from OpenAPI, or turn an OpenAPI URL, file, or pasted spec into runnable code.

paulasilvatech Skill

Upgrade GitHub Actions workflow dependencies to supported runtimes while preserving behavior. Use this skill when logs report deprecated Node.js action runtimes, when editing `.github/workflows/*.yml` or `.github/workflows/*.yaml`, or when choosing pinned action versions and validating upgraded workflow runs.

paulasilvatech Bundle

Analyze local documents or web pages with inline source screenshots in a Word document. Use when asked to use eyeball, run eyeball on a document, analyze a PDF, Word, RTF, or URL with visual proof, or produce a cited report where every factual claim is backed by highlighted source screenshots.

paulasilvatech Bundle

Generate draw.io diagrams as native .drawio files and export them to PNG, SVG, or PDF with embedded XML. Use when the user asks for draw.io diagrams, diagrams.net XML, mxGraphModel, editable diagram source, or exporting .drawio files for documents.

paulasilvatech Skill

Write and review Java Javadoc comments for public, protected, generic, deprecated, and complex members. Use this skill when the user asks for Java documentation, Javadoc best practices, missing comments, API docs, or documentation cleanup in Java code.

paulasilvatech Skill

Create annotated GIF demos and screen recordings for pull requests, bug reports, release notes, and documentation. Use this skill when the user asks to record a UI workflow, capture a before/after demo, make an animated GIF, annotate interactions, or show a bug reproduction.

paulasilvatech Bundle

Convert Markdown files to professionally formatted Word .docx documents with title page metadata, table of contents, styled tables, code blocks, links, and embedded PNG images using pure JavaScript. Use when the user asks to convert Markdown to Word, produce a .docx from .md, embed PNG diagrams, or run the bundled Node converter without Pandoc or LibreOffice.

paulasilvatech Skill

Prepare a student for an exam from provided study material and syllabus only. Use when the user shares notes, a PDF, or syllabus topics and asks what to study, to explain a topic from notes, prepare with limited time, generate exam-ready definitions, key points, keywords, diagram notes, MCQ tricks, or practice questions.

paulasilvatech Skill

Write and review C# XML documentation comments for public and complex internal APIs, including summaries, remarks, examples, cref links, parameters, returns, constructors, properties, and exceptions. Use when asked for C# documentation best practices or XML comments.

paulasilvatech Skill

Review and rewrite code, comments, documentation, and data files to avoid em dashes and en dashes by default. Use this skill when the user asks to remove em dashes, replace Unicode dashes with hyphens, review punctuation in code comments, or enforce ASCII-safe punctuation.

paulasilvatech Skill

Create or improve a concise, appealing, project-specific README.md with a clear overview, setup, usage, and practical examples. Use this skill when the user asks to generate, refresh, polish, rewrite, or make a repository README more useful for GitHub readers.

paulasilvatech Skill

Draft and review professional emails that match the user's established writing style by analyzing recipient context, tone, greeting, structure, sign-off, and language patterns when WorkIQ is available, then saving markdown drafts. Use this skill when the user asks to draft email, write email, compose email, reply email, follow-up email, proposal email, analyze email tone, or perform context-aware email review.

paulasilvatech Bundle

Use PDFtk Server from the command line to merge, split, rotate, encrypt, decrypt, fill forms, flatten forms, watermark, stamp, extract metadata, burst pages, repair PDFs, attach or extract files, collate scans, and manipulate PDF files. Use when asked for pdftk commands or PDF command-line operations.

paulasilvatech Skill

Create a tldr page from documentation URLs and command examples, requiring both URL and command name. Use this skill when the user asks to generate a concise tldr-pages style command reference from official docs and examples.

26zl Bundle

Build a vulnerability exception and risk acceptance tracking system with approval workflows, compensating controls documentation, and expiration management.

paulasilvatech Skill

Implements focused changes in an existing repository through evidence-driven diagnosis, minimal edits, immediate checks, and proportionate regression validation. Use when handling bug fixes, features, improvements, refactoring, modernization, tests, and documentation updates.

paulasilvatech Bundle

Create structured bug reports for Oracle-to-PostgreSQL migration defects with source-of-truth Oracle behavior, PostgreSQL divergence, severity, root cause, remediation, validation, and filename convention. Use when documenting behavioral differences, failed migration tests, or data-layer defects during an Oracle-to-PostgreSQL migration.

paulasilvatech Bundle

Author and explore Fabric IQ Ontology items: entity and relationship types, data bindings and definition updates, or schema, lineage, grounding and graph-walk exploration. Power BI report Q&A is fabriciq. Triggers:create ontology item,bind entity type,update ontology definition,entity types,ground query,ontology lineage

paulasilvatech Skill

Generate technology-agnostic blueprints for comprehensive copilot-instructions.md files that make GitHub Copilot follow exact project versions, architecture, code quality, documentation, testing, and versioning conventions discovered from the codebase. Use this skill when the user asks for configuration variables, wants to create copilot-instructions.md, or needs repository-specific GitHub Copilot coding guidance.

tryboy869 Bundle

Use this skill whenever the user wants to do anything with PDF files. This includes reading or extracting text/tables from PDFs, combining or merging multiple PDFs into one, splitting PDFs apart, rotating pages, adding watermarks, creating new PDFs, filling PDF forms, encrypting/decrypting PDFs, extracting images, and OCR on scanned PDFs to make them searchable. If the user mentions a .pdf file or asks to produce one, use this skill.

tryboy869 Bundle

[Applies to: **/*.py] This guide provides definitive rules for writing Python docstrings and type hints to maximize clarity and utility with pdoc, ensuring accurate and maintainable API documentation.

tryboy869 Bundle

PPTX Skill

tryboy869 Bundle

[Applies to: **/*.{md,mdx}] Definitive guidelines for writing, structuring, and maintaining high-quality MkDocs documentation using modern best practices and Material for MkDocs.

paulasilvatech Skill

Use when an outage, production incident, or significant service degradation has occurred and the team needs to write a structured blameless post-mortem. Triggers on phrases like "write a post-mortem", "incident review", "what went wrong", "outage report", "root cause analysis", or "RCA". Covers timeline reconstruction, contributing factor analysis, impact quantification, and action item generation with owners.

paulasilvatech Skill

Translate an MkDocs documentation stack from docs/docs/en and docs/docs/includes/en into a target ISO 639-1 or locale folder, preserving Markdown structure and updating mkdocs.yml i18n locale, nav_translations, and admonition_translations. Use when the user asks for mkdocs ai translator, MkDocs translation, docs localization, or adding a new documentation locale.

paulasilvatech Skill

Create, review, and structure software documentation with the Diátaxis framework: tutorials, how-to guides, reference, and explanation. Use when the user asks for a Diátaxis documentation expert, a documentation outline, markdown docs, audience-focused docs, or help classifying documentation type.

paulasilvatech Skill

Turn vague, intermittent, or environment-specific bug reports into minimal evidence-backed reproductions before diagnosis or repair. Use when a bug report is incomplete, mixed with an assumed cause, hard to reproduce, or needs observed failure, environment, expected/actual behavior, repeatability, and safe next hypothesis.