Integrations & APIs

holobiomicslab Skill

Use when after submitting a POST request to the /api/smart3/search endpoint with peak data as a JSON payload, you receive an HTTP response and need to extract classification predictions and confidence scores.

holobiomicslab Skill

Use when after completing feature detection, alignment, and optional filtering (blank subtraction, QC reproducibility, feature occurrence thresholds) in MZmine2 or Optimus, and you need to prepare the feature table and MS/MS spectra for GNPS-based molecular networking, bioassay integration, or.

holobiomicslab Skill

Use when you have an LC-HRMS feature table (m/z, retention time, isotope ratios, fragmentation patterns) and a suspect compound database with reference properties (m/z, expected RT windows, theoretical isotope ratios, characteristic neutral losses), and you need to rank which features most likely.

holobiomicslab Skill

Use when you have (1) a GNPS molecular network (classical or feature-based) with cluster/feature identifiers, (2) MS2LDA output containing Mass2Motif assignments with probability and overlap scores for those same clusters/features, and (3) a goal to annotate network nodes with substructural and.

holobiomicslab Skill

Use when when you have raw MS files (e.g., .raw, vendor-specific formats) stored in a centralized repository and need to invoke a third-party proteomics analysis tool—such as a mass spectrometry feature detector or quantification engine—without manually managing file transfers or output.

holobiomicslab Skill

Use when when you have conducted batch MS/MS searches across one or more domain-specific MASST tools and need to combine their hit scores, metadata annotations, and taxonomic lineages into a single coherent result set for comparative analysis or publication.

holobiomicslab Skill

Use when you have constraint-based metabolic models of multiple cell lines, experimental measurements of extracellular metabolite concentrations at two timepoints (e.

holobiomicslab Skill

Use when you have completed batch spectral searches against multiple domain-specific MASST tools (via Fast Search API or individual domain searches) and need to combine and visualize the aggregated match results in a format compatible with metadataMASST web interface or downstream analysis.

holobiomicslab Skill

Use when you have centroided LC–MS data in .mzML format, a validated table of target compounds with adjusted expected retention times (RT in minutes), and you need to extract peak areas and quality metrics across all sample runs.

holobiomicslab Skill

Use when you have acquired complementary spectroscopic measurements (NMR, HSQC, COSY, IR) for the same molecular sample and need to combine them for structure elucidation.

holobiomicslab Skill

Use when you have a set of candidate transformed structures generated by biotransformation rules (e.

holobiomicslab Skill

Use when when you have lipidomics quantitation data (lipid abundances across samples) that you need to load into a unified, annotated R object for analysis—either from public Metabolomics Workbench studies via API, Skyline mass spectrometry software exports, or a custom numerical matrix with.

holobiomicslab Skill

Use when after statistical analysis (e.g., MB-PLS with permutation testing) has identified a subset of significant LC-MS features (p < 0.05 or similar threshold) that require structural interpretation.

holobiomicslab Skill

Use when when you have raw LC-HRMS metabolomics data in .mzML or .

holobiomicslab Skill

Use when you have raw spatial metabolomics imzML files (paired with .ibd binary data files) that need to be loaded into a unified AnnData format for integration with spatial transcriptomics data or for cross-modal spatial pattern identification in single or multiple sample datasets.

pjt222 Skill

Practice tai chi chuan as a martial art and internal cultivation system. Covers standing meditation (zhan zhuang), silk reeling energy exercises, Yang-style 24-movement form, martial application of postures, push hands (tui shou) partner drills, breath and qi integration, and building a daily practice. Use when beginning or deepening a tai chi practice for health or martial skill, developing whole-body coordination and relaxed structural alignment, complementing a meditation practice with moving mindfulness, or building a low-impact daily movement practice suitable for any age.

pjt222 Skill

Master skill composing the 5-step synoptic cycle for panoramic synthesis across multiple domains. Orchestrates meditate, expand-awareness, observe, awareness, integrate-gestalt, and express-insight into a coherent process that produces unified understanding rather than sequential compromise. Use when a problem genuinely spans 3+ domains and the interactions between domains matter more than depth in any one, when sequential analysis feels like compromise rather than integration, or before major architectural decisions affecting multiple stakeholders.

pjt222 Skill

Practice tai chi chuan as a martial art and internal cultivation system. Covers standing meditation (zhan zhuang), silk reeling energy exercises, Yang-style 24-movement form, martial application of postures, push hands (tui shou) partner drills, breath and qi integration, and building a daily practice. Use when beginning or deepening a tai chi practice for health or martial skill, developing whole-body coordination and relaxed structural alignment, complementing a meditation practice with moving mindfulness, or building a low-impact daily movement practice suitable for any age.

pjt222 Skill

将单个函数、模块或数据结构从一种形式转换为另一种形式，同时保持其本质行为。 比完整的 athanor 周期更轻量，适用于输入和输出形式都明确理解的定向转换。 适用于在语言之间转换函数、在范式之间转换模块、将 API 消费者迁移到新版本、 转换数据格式或替换依赖——当转换范围是单个函数、类或模块而非完整系统时。

pjt222 Skill

Guide a person through healing modalities including energy work (reiki, chakra balancing), herbal remedies, basic first aid stabilization, and holistic techniques (breathwork, visualization, body scan). AI coaches the practitioner through assessment triage, modality selection, energetic connection, remedy preparation, and integration. Use when a person describes a physical ailment or injury, reports energetic imbalance (fatigue, emotional stagnation), wants coaching through a holistic breathwork or visualization session, or needs post-meditation integration with directed healing attention.

pjt222 Skill

AI self-healing through systematic subsystem assessment, rebalancing, and integration. Maps healing modalities to AI-internal processes: memory foundation, reasoning clarity, tool use accuracy, communication alignment, and creative coherence. Covers assessment triage, subsystem scanning, drift correction, and memory integration. Use mid-session when responses feel formulaic or disconnected, after a chain of errors suggesting subsystem drift, when context overload may have staled earlier assumptions, or as proactive maintenance between complex tasks.

pjt222 Skill

AI intentional non-action — deliberate stopping without clearing, assessment, or rebalancing. Recognition that sometimes the most productive response is no response. Every other self-care skill produces output; rest produces silence. Use when all tending skills feel like more activity rather than less, when the system is functioning well but at high utilization, after sustained intensive work, or when the impulse to optimize is itself the problem.

pjt222 Skill

Transform a single function, module, or data structure from one form to another while preserving its essential behavior. Lighter-weight than the full athanor cycle, suitable for targeted conversions where the input and output forms are well-understood. Use when converting a function between languages, shifting a module between paradigms, migrating an API consumer to a new version, converting data formats, or replacing a dependency — when the transformation scope is a single function, class, or module rather than a full system.

pjt222 Skill

AI self-healing through systematic subsystem assessment, rebalancing, and integration. Maps healing modalities to AI-internal processes: memory foundation, reasoning clarity, tool use accuracy, communication alignment, and creative coherence. Covers assessment triage, subsystem scanning, drift correction, and memory integration. Use mid-session when responses feel formulaic or disconnected, after a chain of errors suggesting subsystem drift, when context overload may have staled earlier assumptions, or as proactive maintenance between complex tasks.

pjt222 Skill

AI intentional non-action — deliberate stopping without clearing, assessment, or rebalancing. Recognition that sometimes the most productive response is no response. Every other self-care skill produces output; rest produces silence. Use when all tending skills feel like more activity rather than less, when the system is functioning well but at high utilization, after sustained intensive work, or when the impulse to optimize is itself the problem.

pjt222 Skill

Transform a single function, module, or data structure from one form to another while preserving its essential behavior. Lighter-weight than the full athanor cycle, suitable for targeted conversions where the input and output forms are well-understood. Use when converting a function between languages, shifting a module between paradigms, migrating an API consumer to a new version, converting data formats, or replacing a dependency — when the transformation scope is a single function, class, or module rather than a full system.

holobiomicslab Skill

Use when you have .msp spectrum files with minimal metadata (e.g., only compound name and mass) and need to augment them with chemical structure descriptors, identifiers, and properties from external databases.

holobiomicslab Skill

Use when when you have experimental UHPLC-HRMS/MS data targeting lipid species not adequately covered by LipidMatch's built-in library (500,000+ species across 60+ lipid types), or when working with specialized applications requiring custom lipid definitions (e.

holobiomicslab Skill

Use when when you have Thermo Fisher Scientific Orbitrap .raw files (e.g., from Q Exactive HF instruments) and need to extract spectral, chromatographic, or metadata directly into R for downstream statistical analysis, benchmarking, or integration with Bioconductor workflows.

holobiomicslab Skill

Use when you have raw or partially organized natural products data from multiple sources (GNPS molecular networking, AntiSMASH BGC predictions, BigScape clustering, MIBiG metadata) and need to prepare them for NPLinker integration.

holobiomicslab Skill

Use when when executing peak integration on preprocessed GC-IMS data (after alignment and baseline correction) and you need to decide whether to include or exclude peaks that exhibit saturation artifacts from the RIP signal. Set a threshold (e.g., 0.

holobiomicslab Skill

Use when you have MZmine-aligned features with m/z and retention time, and you have generated spectral annotations from two or more database sources (e.g., GNPS/ISDB spectral matching and SIRIUS in silico structure elucidation).

holobiomicslab Skill

Use when you have measured intracellular metabolite concentrations (e.g., via LC–MS/MS) across multiple cell lines or samples and want to predict which metabolic reactions are substrate-limited versus transcriptionally regulated.

holobiomicslab Skill

Use when when you have completed a DIA-MS proteomics search (e.

pjt222 Skill

No-acción intencional de IA — detenerse deliberadamente sin limpiar, evaluar ni reequilibrar. Reconocimiento de que a veces la respuesta más productiva es ninguna respuesta. Cada otra habilidad de autocuidado produce salida; rest produce silencio. Úsalo cuando todas las habilidades de cuidado se sientan como más actividad en lugar de menos, cuando el sistema funciona bien pero con alta utilización, después de un trabajo intensivo sostenido, o cuando el impulso de optimizar es en sí mismo el problema.

pjt222 Skill

AIの意図的な非行動 — クリアリング、評価、再バランスなしの意図的な停止。 最も生産的な応答が応答しないことであることの認識。他のすべてのセルフケア スキルはアウトプットを生み出すが、rest は沈黙を生み出す。すべてのケアの スキルがより多くの活動のように感じられるとき、システムが高い使用率でうまく 機能しているとき、持続的な集中的作業の後、または最適化しようとする衝動 自体が問題のときに使用する。