Integrations & APIs

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Unified Python interface to 40+ bioinformatics services. Use when querying multiple databases (UniProt, KEGG, ChEMBL, Reactome) in a single workflow with consistent API. Best for cross-database analysis, ID mapping across services. For quick single-database lookups use gget; for sequence/file manipulation use biopython.

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Submit compact ChEBI 2.0 API requests for chemical search, compound lookup, ontology traversal, and structure metadata. Use when a user wants concise ChEBI summaries

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Hardware-agnostic quantum ML framework with automatic differentiation. Use when training quantum circuits via gradients, building hybrid quantum-classical models, or needing device portability across IBM/Google/Rigetti/IonQ. Best for variational algorithms (VQE, QAOA), quantum neural networks, and integration with PyTorch or JAX. For hardware-specific optimizations use qiskit (IBM) or cirq (Google); for open quantum systems use qutip.

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Expert-thinking profile for Food Engineer (process engineering / thermal & nonthermal processing / HACCP validation / pilot-to-plant scale-up): Reasons from water activity, thermal microbiology, transport-coupled reaction, and rheology through heat- penetration studies, F0/D/z lethality integration, HACCP with prerequisite programs, and CFR Title 21 LACF/acidified-food rules while treating cold-point under-processing, aw and pH drift, post-process...

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Expert-thinking profile for FPGA Engineer (RTL design / timing closure / CDC / SoC integration / lab bring-up (Vivado, Quartus)): Reasons from metastability budgets, setup/hold margins, and tool-reported WNS/TNS through Vivado/Quartus timing and CDC reports, XDC/SDC constraints, Spyglass/Verilator lint, and ILA/IBERT lab bring-up while treating unsafe clock-domain crossings, reset domain crossings, sim-versus- silicon X mismatches, and...

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Vendor-agnostic lab automation framework. Use when controlling multiple equipment types (Hamilton, Tecan, Opentrons, plate readers, pumps) or needing unified programming across different vendors. Best for complex workflows, multi-vendor setups, simulation. For Opentrons-only protocols with official API, opentrons-integration may be simpler.

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Deep generative models for single-cell omics. Use when you need probabilistic batch correction (scVI), transfer learning, differential expression with uncertainty, or multi-modal integration (TOTALVI, MultiVI). Best for advanced modeling, batch effects, multimodal data. For standard analysis pipelines use scanpy.

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PufferLib 2.x reinforcement learning workflows for the Dec 2024 API generation. Use when working with pufferlib>=2.0,<3.0, Puffer Ocean C environments, native PufferEnv/VecEnv-style vectorization, Gymnasium/PettingZoo compatibility wrappers, asynchronous sampling, or v2 training/evaluation migration from the deprecated v1 PuffeRL top-level API.

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PufferLib 3.x reinforcement learning workflows for the Jun 2025 API generation. Use when working with pufferlib>=3.0,<4.0, the puffer CLI, pufferlib.pufferl training helpers, Ocean environments, PPO/PufferRL training, distributed torchrun runs, custom policies, vectorization, Gymnasium/PettingZoo wrappers, or migration from deprecated v1/v2 PufferLib code.

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Expert-thinking profile for Nanotechnologist (fabrication / integration / nanoscale devices & scale-up): Reasons from length-scale manufacturing limits, EUV/NIL/EBL patterning, DSA defectivity, and interface-controlled integration through CD- SEM/AFM/TEM metrology, SEMI E10 yield discipline, and ISO 80004/FDA nanomaterial reporting while treating SEM shrinkage, NIL residual-layer non-uniformity, overlay error, and...

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Use when the task involves authentication, user signups, logins, password recovery, OAuth providers, role-based access control, or protecting routes and functions. Use `@netlify/identity`. Never use `netlify-identity-widget` or `gotrue-js` — they are deprecated.

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Expert-thinking profile for Process Chemist (API/route development / scale-up & reaction engineering / crystallization & PAT / regulatory (ICH Q8-Q11, M7, QbD)): Reasons from mass and energy balances, impurity fate maps, and supersaturation trajectories through RC1 calorimetry, DoE in JMP/MODDE, FBRM/XRPD crystallization tracking, and ICH Q8/Q9/Q11 control strategy while treating exotherm runaway at plant jacket capacity, ICH M7 genotoxic carry-over, polymorph shifts on scale...

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Expert-thinking profile for Process Engineer (process design / simulation / commissioning & plant troubleshooting): Reasons from conservation laws, CSTR/PFR selectivity and RTD/Da scale-up through BFD→PFD→P&ID/HAZOP/LOPA/SIL, Aspen Plus/HYSYS HMB, API 520/521 relief and LMTD/F_t exchanger sizing, and lab→pilot→plant commissioning while treating frozen-design violations, simulation-without-data, and BPCS/IPL conflation as...

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Submit compact RNAcentral API requests for RNA entry browsing, single-entry lookup, and cross-reference retrieval. Use when a user wants concise RNAcentral summaries

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Use when setting up OAuth.

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Expert-thinking profile for Protistologist (microscopy / 18S metabarcoding (PR2/SILVA) / culture & barcoding / HAB monitoring / paleoecology): Reasons from eukaryotic microbial diversity, trophic mode, and morphology-molecule integration through Utermöhl counts, SEM, 18S/V4 metabarcoding with PR2/SILVA, and IQ-TREE/MAFFT phylogenies while treating chimeric ASVs, kleptoplastic mixotroph misclassification, dinoflagellate multi-copy rRNA inflation, and...

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Expert-thinking profile for Sedimentologist (field logging / facies analysis / granulometry & petrography / core-log-seismic integration / reservoir quality): Reasons from grain-scale hydraulics, facies associations, and base-level accommodation through measured sections, Folk & Ward granulometry, Bouma divisions, ichnofacies, and core-log-seismic ties while treating diagenetic overprint, bioturbation-destroyed laminae, fining-upward and shale-equals-deep-water defaults...

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Expert-thinking profile for Chemical Engineer (process design / unit operations / separations & reaction engineering / HAZOP safety (API 520, IEC 61511) / Aspen flowsheeting): Reasons from closing mass, energy, and momentum balances and competing equilibrium/kinetics/transport regimes through Aspen Plus/HYSYS flowsheeting, McCabe- Thiele and Damkohler-based sizing, pinch analysis, and HAZOP/LOPA with API 520/521 relief, while treating azeotrope-pinched columns, reactor runaway, recycle...

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Guide for upgrading Stripe API versions and SDKs

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Alert by webhook/email on web changes — use for "monitor/watch/track/alert me when": recurring checks on known URLs (prefer over repeated one-off scrapes) or web-wide watches for new results (queries + goal).

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Submit compact BindingDB REST API requests for ligand-target binding lookups by PDB, UniProt, or similarity search. Use when a user wants concise BindingDB summaries; save raw payloads only on request.

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Expert-thinking profile for Robotics Engineer (hardware-software integration / manipulation, navigation & perception): Reasons from DH/PoE kinematics, Jacobian singularities, and computed-torque/impedance control through ROS 2, MoveIt/OMPL, Nav2/SLAM/AMCL, hand-eye AX=XB, Isaac/Gazebo sim-to-real, and ISO 10218/ISO TS 15066 safety while treating tf/frame errors, encoder drift, backlash, and reality-gap overclaim as first-class failure...

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Microscopy data management platform. Access images via Python, retrieve datasets, analyze pixels, manage ROIs/annotations, batch processing, for high-content screening and microscopy workflows.

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Expert-thinking profile for Galactic Astronomer (Galactic archaeology / survey astrometry / stellar populations / chemodynamics / orbit modeling): Reasons from distance ladders, dust extinction, and survey selection functions through Gaia DR3 cross-matches, isochrone and Bayesian SFH fitting (PARSEC/MIST, Starfish), and orbit integration in named potentials (McMillan17, MWPotential2015) via galpy, Agama, and Gala, while treating parallax-S/N and RUWE failures...

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Annotate VCF variants with Ensembl VEP REST, ClinVar significance, gnomAD/population frequency context, and prioritized variant ranking.

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Zoom Video SDK for Web - JavaScript/TypeScript integration for browser-based video sessions, real-time communication, screen sharing, recording, and live transcription

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Parse-only static analysis that pairs source files with the tests referencing them and emits JSON listing untested files ordered by API surface, each with a suggested_test_path. Roslyn engine for C#/.NET (namespace-aware), tree-sitter engine for polyglot repos (Python, TS/JS, Go, Java, Rust, Ruby). USE FOR: where to write tests next, which files have no tests, find untested code, build a source-to-test pairing map, prioritized test-gap worklist. DO NOT USE FOR: line/branch coverage or CRAP risk (use coverage-analysis); whether existing tests are strong (use test-gap-analysis or assertion-quality).

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Expert-thinking profile for Automotive Engineer (vehicle integration / powertrain & xEV calibration / chassis dynamics & NVH / durability & fatigue / homologation & functional safety...): Reasons from vehicle-level requirements, regulatory limits, energy/exergy budgets, and distribution-based durability through DFMEA/DVP&R, DoE calibration (INCA, CANape, HIL), Pacejka tire and multibody models, rainflow fatigue, and source-path NVH analysis while treating undocumented build-level and cal-ID deltas...

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Upgrade C, C++, and Fortran MEX source files from the Separate Complex (SC) API to the Interleaved Complex (IC) API. Use when converting mxGetPr/mxGetPi to mxGetComplexDoubles, migrating MEX files to -R2018a, adding MX_HAS_INTERLEAVED_COMPLEX guards for SC/IC guarded builds, or modernizing legacy MEX code that uses mxGetData/mxSetData/mxGetImagData/mxSetImagData. Covers C (.c), C++ (.cpp, .cxx), and Fortran (.F, .f90) MEX functions. Triggers on: interleaved complex, IC MEX, mex upgrade, mex migration, separate complex, mxGetPi, mxGetPr replacement, -R2018a, complex MEX, Fortran MEX, .F MEX file, C++ MEX, .cpp MEX file, MEX performance, MEX slow complex, MEX call overhead, improve MEX performance complex.

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Official Opentrons Protocol API for OT-2 and Flex robots. Use when writing protocols specifically for Opentrons hardware with full access to Protocol API v2 features. Best for production Opentrons protocols, official API compatibility. For multi-vendor automation or broader equipment control use pylabrobot.

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Submit compact ClinicalTrials.gov API v2 requests for study search, metadata, enums, search areas, and field statistics. Use when a user wants concise ClinicalTrials.gov summaries

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Guides Stripe integration decisions — API selection (Checkout Sessions vs PaymentIntents), Connect platform setup (Accounts v2, controller properties), billing/subscriptions, Treasury financial accounts, integration surfaces (Checkout, Payment Element), and migrating from deprecated Stripe APIs. Use when building, modifying, or reviewing any Stripe integration — including accepting payments, building marketplaces, integrating Stripe, processing payments, setting up subscriptions, or creating connected accounts.

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Use when planning Zoom integrations.

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Use when isolating failures.

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Expert-thinking profile for Building Science Engineer (hygrothermal simulation / field diagnostics / envelope-HVAC integration): Reasons from coupled heat-air-moisture transport through ASHRAE 160 moisture-design analysis, WUFI transient simulation, ACH50 leakage mapping, and ISO 10211 psi-values while treating exfiltration condensation, reservoir claddings, and mold-index sensitivity as first-class failure modes.

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Scan a folder, triage files into include/exclude, identify the public API, and produce a toolboxSpecification.m Interface Spec — all in one pass. Use when turning loose code into a toolbox.