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Katalog

by @metinduraktr-44 · plugin · 100 skills

Katalog from metinduraktr-44/claude-otonom-sistem.

Install the whole plugin (CLI)
npx skillmds add metinduraktr-44/sora npx skillmds add metinduraktr-44/railway-new npx skillmds add metinduraktr-44/manim npx skillmds add metinduraktr-44/speech npx skillmds add metinduraktr-44/commit npx skillmds add metinduraktr-44/deslop npx skillmds add metinduraktr-44/design-to-code npx skillmds add metinduraktr-44/railway-deploy npx skillmds add metinduraktr-44/railway-domain npx skillmds add metinduraktr-44/railway-status npx skillmds add metinduraktr-44/esm npx skillmds add metinduraktr-44/remotion npx skillmds add metinduraktr-44/workorai npx skillmds add metinduraktr-44/mui npx skillmds add metinduraktr-44/seo npx skillmds add metinduraktr-44/railway-metrics npx skillmds add metinduraktr-44/railway-service npx skillmds add metinduraktr-44/aeon npx skillmds add metinduraktr-44/cirq npx skillmds add metinduraktr-44/dask npx skillmds add metinduraktr-44/gget npx skillmds add metinduraktr-44/pymc-bayesian-modeling npx skillmds add metinduraktr-44/shap npx skillmds add metinduraktr-44/vaex npx skillmds add metinduraktr-44/scrape npx skillmds add metinduraktr-44/search npx skillmds add metinduraktr-44/jira npx skillmds add metinduraktr-44/sql-pro npx skillmds add metinduraktr-44/bleu npx skillmds add metinduraktr-44/commit-smart npx skillmds add metinduraktr-44/gmod-addon-maker npx skillmds add metinduraktr-44/screenshot npx skillmds add metinduraktr-44/transcribe npx skillmds add metinduraktr-44/railway-database npx skillmds add metinduraktr-44/railway-projects npx skillmds add metinduraktr-44/gtars npx skillmds add metinduraktr-44/modal npx skillmds add metinduraktr-44/pymoo npx skillmds add metinduraktr-44/pysam npx skillmds add metinduraktr-44/pytdc npx skillmds add metinduraktr-44/qutip npx skillmds add metinduraktr-44/rdkit npx skillmds add metinduraktr-44/simpy npx skillmds add metinduraktr-44/sympy npx skillmds add metinduraktr-44/create-pr npx skillmds add metinduraktr-44/find-bugs npx skillmds add metinduraktr-44/c-pro npx skillmds add metinduraktr-44/codex npx skillmds add metinduraktr-44/pocketbase-sdk npx skillmds add metinduraktr-44/railway-templates npx skillmds add metinduraktr-44/biomni npx skillmds add metinduraktr-44/flowio npx skillmds add metinduraktr-44/geniml npx skillmds add metinduraktr-44/pathml npx skillmds add metinduraktr-44/plotly npx skillmds add metinduraktr-44/polars npx skillmds add metinduraktr-44/qiskit npx skillmds add metinduraktr-44/scanpy npx skillmds add metinduraktr-44/iterate-pr npx skillmds add metinduraktr-44/crewai npx skillmds add metinduraktr-44/gemini npx skillmds add metinduraktr-44/convex npx skillmds add metinduraktr-44/devil npx skillmds add metinduraktr-44/railway-deployment npx skillmds add metinduraktr-44/adaptyv npx skillmds add metinduraktr-44/anndata npx skillmds add metinduraktr-44/astropy npx skillmds add metinduraktr-44/cobrapy npx skillmds add metinduraktr-44/datamol npx skillmds add metinduraktr-44/denario npx skillmds add metinduraktr-44/lamindb npx skillmds add metinduraktr-44/matchms npx skillmds add metinduraktr-44/medchem npx skillmds add metinduraktr-44/molfeat npx skillmds add metinduraktr-44/pydicom npx skillmds add metinduraktr-44/seaborn npx skillmds add metinduraktr-44/code-review npx skillmds add metinduraktr-44/cf-crawl npx skillmds add metinduraktr-44/planning npx skillmds add metinduraktr-44/gepetto npx skillmds add metinduraktr-44/llm-ops npx skillmds add metinduraktr-44/postgresql npx skillmds add metinduraktr-44/using-neon npx skillmds add metinduraktr-44/angular npx skillmds add metinduraktr-44/cpp-pro npx skillmds add metinduraktr-44/graphql npx skillmds add metinduraktr-44/php-pro npx skillmds add metinduraktr-44/pocketbase-hooks npx skillmds add metinduraktr-44/kaizen npx skillmds add metinduraktr-44/linear npx skillmds add metinduraktr-44/nowait-reasoning-optimizer npx skillmds add metinduraktr-44/railway-environment npx skillmds add metinduraktr-44/arboreto npx skillmds add metinduraktr-44/deepchem npx skillmds add metinduraktr-44/diffdock npx skillmds add metinduraktr-44/fluidsim npx skillmds add metinduraktr-44/histolab npx skillmds add metinduraktr-44/networkx npx skillmds add metinduraktr-44/pydeseq2 npx skillmds add metinduraktr-44/pyhealth
⬇ Download

Skills in this plugin

  1. sora · metinduraktr-44 bundle
    Use when the user asks to generate, remix, poll, list, download, or delete Sora videos via OpenAI’s video API using the bundled CLI (`scripts/sora.py`), including requests like “generate AI video,” “Sora,” “video remix,” “download video/thumbnail/spritesheet,” and batch video generation; requires `OPENAI_API_KEY` and Sora API access.
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  2. railway-new · metinduraktr-44 bundle
    Create Railway projects, services, and databases with proper configuration. Use when user says "setup", "deploy to railway", "initialize", "create project", "create service", or wants to deploy from GitHub. Handles initial setup AND adding services to existing projects. For databases, use railway-railway-database skill instead.
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  3. manim · metinduraktr-44 bundle
    Comprehensive guide for Manim Community - Python framework for creating mathematical animations and educational videos with programmatic control
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  4. speech · metinduraktr-44 bundle
    Use when the user asks for text-to-speech narration or voiceover, accessibility reads, audio prompts, or batch speech generation via the OpenAI Audio API; run the bundled CLI (`scripts/text_to_speech.py`) with built-in voices and require `OPENAI_API_KEY` for live calls. Custom voice creation is out of scope.
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  5. commit · metinduraktr-44
    Create commit messages following Sentry conventions. Use when committing code changes, writing commit messages, or formatting git history. Follows conventional commits with Sentry-specific issue references.
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  6. deslop · metinduraktr-44
    Remove AI-generated code slop from a branch. Use when cleaning up AI-generated code, removing unnecessary comments, defensive checks, or type casts. Checks diff against main and fixes style inconsistencies.
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  7. design-to-code · metinduraktr-44 bundle
    Pixel-perfect Figma to React conversion using coderio. Generates production-ready code (TypeScript, Vite, TailwindCSS V4) with high visual fidelity. Features robust error handling, checkpoint recovery, and streamlined execution via helper script.
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  8. railway-deploy · metinduraktr-44
    Deploy code to Railway using "railway up". Use when user wants to push code, says "railway up", "deploy", "ship", or "push". For initial setup or creating services, use railway-new skill. For Docker images, use railway-environment skill.
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  9. railway-domain · metinduraktr-44
    Add, view, or remove domains for Railway services. Use when user wants to add a domain, generate a railway domain, check current domains, get the URL for a service, or remove a domain.
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  10. railway-status · metinduraktr-44
    Check current Railway project status for this directory. Use when user asks "railway status", "is it running", "what's deployed", "deployment status", or about uptime. NOT for variables or configuration queries - use railway-environment skill for those.
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  11. esm · metinduraktr-44 bundle
    Comprehensive toolkit for protein language models including ESM3 (generative multimodal protein design across sequence, structure, and function) and ESM C (efficient protein embeddings and representations). Use this skill when working with protein sequences, structures, or function prediction; designing novel proteins; generating protein embeddings; performing inverse folding; or conducting protein engineering tasks. Supports both local model usage and cloud-based Forge API for scalable inference.
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  12. remotion · metinduraktr-44 bundle
    Best practices and comprehensive guide for Remotion - programmatic video creation in React with animations, compositions, and media handling
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  13. workorai · metinduraktr-44 bundle
    WorkorAI talent marketplace skill: candidate job search and employer hiring with white-box match explanations via the WorkorAI MCP server (https://workorai.com/mcp). Use when the user asks to find a job, apply to jobs, respond to employer invitations, or when an employer wants to post jobs, search and evaluate candidates, invite them, and review applicants.
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  14. mui · metinduraktr-44 bundle
    Material-UI v7 component library patterns including sx prop styling, theme integration, responsive design, and MUI-specific hooks. Use when working with MUI components, styling with sx prop, theme customization, or MUI utilities.
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  15. seo · metinduraktr-44
    Optimize for search engine visibility and ranking. Use when asked to "improve SEO", "optimize for search", "fix meta tags", "add structured data", "sitemap optimization", or "search engine optimization".
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  16. railway-metrics · metinduraktr-44
    Query resource usage metrics for Railway services. Use when user asks about resource usage, CPU, memory, network, disk, or service performance like "how much memory is my service using" or "is my service slow".
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  17. railway-service · metinduraktr-44
    Check service status, rename services, change service icons, link services, or create services with Docker images. For creating services with local code, prefer railway-new skill. For GitHub repo sources, use railway-new skill to create empty service then railway-environment skill to configure source.
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  18. aeon · metinduraktr-44 bundle
    This skill should be used for time series machine learning tasks including classification, regression, clustering, forecasting, anomaly detection, segmentation, and similarity search. Use when working with temporal data, sequential patterns, or time-indexed observations requiring specialized algorithms beyond standard ML approaches. Particularly suited for univariate and multivariate time series analysis with scikit-learn compatible APIs.
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  19. cirq · metinduraktr-44 bundle
    Quantum computing framework for building, simulating, optimizing, and executing quantum circuits. Use this skill when working with quantum algorithms, quantum circuit design, quantum simulation (noiseless or noisy), running on quantum hardware (Google, IonQ, AQT, Pasqal), circuit optimization and compilation, noise modeling and characterization, or quantum experiments and benchmarking (VQE, QAOA, QPE, randomized benchmarking).
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  20. dask · metinduraktr-44 bundle
    Parallel/distributed computing. Scale pandas/NumPy beyond memory, parallel DataFrames/Arrays, multi-file processing, task graphs, for larger-than-RAM datasets and parallel workflows.
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  21. gget · metinduraktr-44 bundle
    CLI/Python toolkit for rapid bioinformatics queries. Preferred for quick BLAST searches. Access to 20+ databases: gene info (Ensembl/UniProt), AlphaFold, ARCHS4, Enrichr, OpenTargets, COSMIC, genome downloads. For advanced BLAST/batch processing, use biopython. For multi-database integration, use bioservices.
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  22. pymc-bayesian-modeling · metinduraktr-44 bundle
    Bayesian modeling with PyMC. Build hierarchical models, MCMC (NUTS), variational inference, LOO/WAIC comparison, posterior checks, for probabilistic programming and inference.
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  23. shap · metinduraktr-44 bundle
    Model interpretability and explainability using SHAP (SHapley Additive exPlanations). Use this skill when explaining machine learning model predictions, computing feature importance, generating SHAP plots (waterfall, beeswarm, bar, scatter, force, heatmap), debugging models, analyzing model bias or fairness, comparing models, or implementing explainable AI. Works with tree-based models (XGBoost, LightGBM, Random Forest), deep learning (TensorFlow, PyTorch), linear models, and any black-box model.
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  24. vaex · metinduraktr-44 bundle
    Use this skill for processing and analyzing large tabular datasets (billions of rows) that exceed available RAM. Vaex excels at out-of-core DataFrame operations, lazy evaluation, fast aggregations, efficient visualization of big data, and machine learning on large datasets. Apply when users need to work with large CSV/HDF5/Arrow/Parquet files, perform fast statistics on massive datasets, create visualizations of big data, or build ML pipelines that don't fit in memory.
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  25. scrape · metinduraktr-44 bundle
    Scrape any webpage as clean markdown via Bright Data Web Unlocker API. Bypasses bot detection and CAPTCHA. Requires BRIGHTDATA_API_KEY and BRIGHTDATA_UNLOCKER_ZONE environment variables.
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  26. search · metinduraktr-44 bundle
    Search Google via Bright Data SERP API. Returns structured JSON results with title, link, and description. Requires BRIGHTDATA_API_KEY and BRIGHTDATA_UNLOCKER_ZONE environment variables.
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  27. jira · metinduraktr-44 bundle
    Use when the user mentions Jira issues (e.g., "PROJ-123"), asks about tickets, wants to create/view/update issues, check sprint status, or manage their Jira workflow. Triggers on keywords like "jira", "issue", "ticket", "sprint", "backlog", or issue key patterns.
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  28. sql-pro · metinduraktr-44
    Master modern SQL with cloud-native databases, OLTP/OLAP optimization, and advanced query techniques. Expert in performance tuning, data modeling, and hybrid analytical systems.
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  29. bleu · metinduraktr-44 bundle
    Use this skill whenever a developer wants to turn an idea into a complete, production-ready, end-to-end system plan BEFORE writing any code. Trigger on 'plan this system', 'design the architecture for', 'help me blueprint', 'deep plan for X', 'break this idea into components', 'expand into action points', 'full implementation plan', or when the user pastes a project idea wanting architecture, components, pipelines, and file-level execution mapped out. Casual phrasing also triggers: 'help me think this through end-to-end', 'plan before coding'. Also covers living-workspace patterns: self-improving knowledge bases, reflection loops with auditor agents, four-agent teams, schema-as-code, wiki health scoring. **Resume triggers**: 'where did we leave off', 'continue this plan', 'resume my blueprint' - rehydrates state from disk via SESSION.md/NEXT.md/decisions/. Web research is mandatory every invocation.
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  30. commit-smart · metinduraktr-44
    Analyze staged/unstaged changes and create semantic conventional commits with context about WHY, not just WHAT. Auto-detects commit type and scope from the diff. Supports optional type/scope arguments. Usage - /commit-smart, /commit-smart fix, /commit-smart refactor api
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  31. gmod-addon-maker · metinduraktr-44 bundle
    A tool for creating and managing Garry's Mod addons, including Lua scripting, content creation, and addon packaging. Use when: developing new addons, writing Lua scripts for GMod, organizing addon files, or when user mentions Garry's Mod, GMod, Lua scripting, or addon development.
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  32. screenshot · metinduraktr-44 bundle
    Use when the user explicitly asks for a desktop or system screenshot (full screen, specific app or window, or a pixel region), or when tool-specific capture capabilities are unavailable and an OS-level capture is needed.
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  33. transcribe · metinduraktr-44 bundle
    Transcribe audio files to text with optional diarization and known-speaker hints. Use when a user asks to transcribe speech from audio/video, extract text from recordings, or label speakers in interviews or meetings.
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  34. railway-database · metinduraktr-44
    Add official Railway database services (Postgres, Redis, MySQL, MongoDB). Use when user wants to add a database, says "add postgres", "add redis", "add database", "connect to database", or "wire up the database". For other templates (Ghost, Strapi, n8n), use the railway-templates skill.
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  35. railway-projects · metinduraktr-44
    List, switch, and configure Railway projects. Use when user wants to list all projects, switch projects, rename a project, enable/disable PR deploys, make a project public/private, or modify project settings.
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  36. gtars · metinduraktr-44 bundle
    High-performance toolkit for genomic interval analysis in Rust with Python bindings. Use when working with genomic regions, BED files, coverage tracks, overlap detection, tokenization for ML models, or fragment analysis in computational genomics and machine learning applications.
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  37. modal · metinduraktr-44 bundle
    Run Python code in the cloud with serverless containers, GPUs, and autoscaling. Use when deploying ML models, running batch processing jobs, scheduling compute-intensive tasks, or serving APIs that require GPU acceleration or dynamic scaling.
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  38. pymoo · metinduraktr-44 bundle
    Multi-objective optimization framework. NSGA-II, NSGA-III, MOEA/D, Pareto fronts, constraint handling, benchmarks (ZDT, DTLZ), for engineering design and optimization problems.
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  39. pysam · metinduraktr-44 bundle
    Genomic file toolkit. Read/write SAM/BAM/CRAM alignments, VCF/BCF variants, FASTA/FASTQ sequences, extract regions, calculate coverage, for NGS data processing pipelines.
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  40. pytdc · metinduraktr-44 bundle
    Therapeutics Data Commons. AI-ready drug discovery datasets (ADME, toxicity, DTI), benchmarks, scaffold splits, molecular oracles, for therapeutic ML and pharmacological prediction.
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  41. qutip · metinduraktr-44 bundle
    Quantum mechanics simulations and analysis using QuTiP (Quantum Toolbox in Python). Use when working with quantum systems including: (1) quantum states (kets, bras, density matrices), (2) quantum operators and gates, (3) time evolution and dynamics (Schrödinger, master equations, Monte Carlo), (4) open quantum systems with dissipation, (5) quantum measurements and entanglement, (6) visualization (Bloch sphere, Wigner functions), (7) steady states and correlation functions, or (8) advanced methods (Floquet theory, HEOM, stochastic solvers). Handles both closed and open quantum systems across various domains including quantum optics, quantum computing, and condensed matter physics.
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  42. rdkit · metinduraktr-44 bundle
    Cheminformatics toolkit for fine-grained molecular control. SMILES/SDF parsing, descriptors (MW, LogP, TPSA), fingerprints, substructure search, 2D/3D generation, similarity, reactions. For standard workflows with simpler interface, use datamol (wrapper around RDKit). Use rdkit for advanced control, custom sanitization, specialized algorithms.
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  43. simpy · metinduraktr-44 bundle
    Process-based discrete-event simulation framework in Python. Use this skill when building simulations of systems with processes, queues, resources, and time-based events such as manufacturing systems, service operations, network traffic, logistics, or any system where entities interact with shared resources over time.
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  44. sympy · metinduraktr-44 bundle
    Use this skill when working with symbolic mathematics in Python. This skill should be used for symbolic computation tasks including solving equations algebraically, performing calculus operations (derivatives, integrals, limits), manipulating algebraic expressions, working with matrices symbolically, physics calculations, number theory problems, geometry computations, and generating executable code from mathematical expressions. Apply this skill when the user needs exact symbolic results rather than numerical approximations, or when working with mathematical formulas that contain variables and parameters.
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  45. create-pr · metinduraktr-44
    Create pull requests following Sentry conventions. Use when opening PRs, writing PR descriptions, or preparing changes for review. Follows Sentry's code review guidelines.
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  46. find-bugs · metinduraktr-44
    Find bugs, security vulnerabilities, and code quality issues in local branch changes. Use when asked to review changes, find bugs, security review, or audit code on the current branch.
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  47. c-pro · metinduraktr-44
    Write efficient C code with proper memory management, pointer
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  48. codex · metinduraktr-44 bundle
    Use when the user asks to run Codex CLI (codex exec, codex resume) or references OpenAI Codex for code analysis, refactoring, or automated editing. Uses GPT-5.2 by default for state-of-the-art software engineering.
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  49. pocketbase-sdk · metinduraktr-44
    JavaScript SDK usage for PocketBase client applications. Use when calling PocketBase from frontend or Node.js, authenticating users, subscribing to realtime events, uploading files, or working with the PocketBase JS/TS SDK. Covers CRUD, auth flows, authStore, realtime SSE, file handling, batch operations, and query syntax.
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  50. railway-templates · metinduraktr-44
    Search and deploy services from Railway's template marketplace. Use when user wants to add a service from a template, find templates for a specific use case, or deploy tools like Ghost, Strapi, n8n, Minio, Uptime Kuma, etc. For databases (Postgres, Redis, MySQL, MongoDB), prefer the railway-database skill.
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  51. biomni · metinduraktr-44 bundle
    Autonomous biomedical AI agent framework for executing complex research tasks across genomics, drug discovery, molecular biology, and clinical analysis. Use this skill when conducting multi-step biomedical research including CRISPR screening design, single-cell RNA-seq analysis, ADMET prediction, GWAS interpretation, rare disease diagnosis, or lab protocol optimization. Leverages LLM reasoning with code execution and integrated biomedical databases.
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  52. flowio · metinduraktr-44 bundle
    Parse FCS (Flow Cytometry Standard) files v2.0-3.1. Extract events as NumPy arrays, read metadata/channels, convert to CSV/DataFrame, for flow cytometry data preprocessing.
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  53. geniml · metinduraktr-44 bundle
    This skill should be used when working with genomic interval data (BED files) for machine learning tasks. Use for training region embeddings (Region2Vec, BEDspace), single-cell ATAC-seq analysis (scEmbed), building consensus peaks (universes), or any ML-based analysis of genomic regions. Applies to BED file collections, scATAC-seq data, chromatin accessibility datasets, and region-based genomic feature learning.
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  54. pathml · metinduraktr-44 bundle
    Computational pathology toolkit for analyzing whole-slide images (WSI) and multiparametric imaging data. Use this skill when working with histopathology slides, H&E stained images, multiplex immunofluorescence (CODEX, Vectra), spatial proteomics, nucleus detection/segmentation, tissue graph construction, or training ML models on pathology data. Supports 160+ slide formats including Aperio SVS, NDPI, DICOM, OME-TIFF for digital pathology workflows.
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  55. plotly · metinduraktr-44 bundle
    Interactive scientific and statistical data visualization library for Python. Use when creating charts, plots, or visualizations including scatter plots, line charts, bar charts, heatmaps, 3D plots, geographic maps, statistical distributions, financial charts, and dashboards. Supports both quick visualizations (Plotly Express) and fine-grained customization (graph objects). Outputs interactive HTML or static images (PNG, PDF, SVG).
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  56. polars · metinduraktr-44 bundle
    Fast DataFrame library (Apache Arrow). Select, filter, group_by, joins, lazy evaluation, CSV/Parquet I/O, expression API, for high-performance data analysis workflows.
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  57. qiskit · metinduraktr-44 bundle
    Comprehensive quantum computing toolkit for building, optimizing, and executing quantum circuits. Use when working with quantum algorithms, simulations, or quantum hardware including (1) Building quantum circuits with gates and measurements, (2) Running quantum algorithms (VQE, QAOA, Grover), (3) Transpiling/optimizing circuits for hardware, (4) Executing on IBM Quantum or other providers, (5) Quantum chemistry and materials science, (6) Quantum machine learning, (7) Visualizing circuits and results, or (8) Any quantum computing development task.
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  58. scanpy · metinduraktr-44 bundle
    Single-cell RNA-seq analysis. Load .h5ad/10X data, QC, normalization, PCA/UMAP/t-SNE, Leiden clustering, marker genes, cell type annotation, trajectory, for scRNA-seq analysis.
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  59. iterate-pr · metinduraktr-44
    Iterate on a PR until CI passes. Use when you need to fix CI failures, address review feedback, or continuously push fixes until all checks are green. Automates the feedback-fix-push-wait cycle.
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  60. crewai · metinduraktr-44
    Expert in CrewAI - the leading role-based multi-agent framework used by 60% of Fortune 500 companies. Covers agent design with roles and goals, task definition, crew orchestration, process types (sequential, hierarchical, parallel), memory systems, and flows for complex workflows. Essential for building collaborative AI agent teams. Use when: crewai, multi-agent team, agent roles, crew of agents, role-based agents.
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  61. gemini · metinduraktr-44 bundle
    Use when the user asks to run Gemini CLI for code review, plan review, or big context (>200k) processing. Ideal for comprehensive analysis requiring large context windows. Uses Gemini 3 Pro by default for state-of-the-art reasoning and coding.
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  62. convex · metinduraktr-44
    Convex reactive backend expert: schema design, TypeScript functions, real-time subscriptions, auth, file storage, scheduling, and deployment.
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  63. devil · metinduraktr-44 bundle
    Reviews a product document (PRD, spec, design brief) BEFORE implementation to surface holes — undefined edge cases, missing states, policy gaps — by attacking what the document is SILENT about (things unwritten, and things written only for the happy path). Acts as a strict "sign-off manager," ruling Approve / Conditional / Reject and producing a polite, forwardable question list. Works for planners/PMs (self-review before sharing), engineers (blocking questions before coding), and designers (screen states with no mockup). Use whenever the user wants a spec/PRD/plan/brief checked for readiness or gaps, or says "review this spec", "find holes in this PRD", "poke holes in this", "is this plan good to build?", "can I start implementing this?", "what states/edge cases am I missing?", "what should I ask the PM before coding?", "run devil", or pastes/links a planning document and asks whether it's ready to act on. Do NOT use it to: write or draft a new spec, summarize or translate a document, estimate/break down tic
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  64. railway-deployment · metinduraktr-44
    Manage Railway deployments - view logs, redeploy, restart, or remove deployments. Use for deployment lifecycle (remove, stop, redeploy, restart), deployment visibility (list, status, history), and troubleshooting (logs, errors, failures, crashes). NOT for deleting services - use railway-environment skill with isDeleted for that.
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  65. adaptyv · metinduraktr-44 bundle
    Cloud laboratory platform for automated protein testing and validation. Use when designing proteins and needing experimental validation including binding assays, expression testing, thermostability measurements, enzyme activity assays, or protein sequence optimization. Also use for submitting experiments via API, tracking experiment status, downloading results, optimizing protein sequences for better expression using computational tools (NetSolP, SoluProt, SolubleMPNN, ESM), or managing protein design workflows with wet-lab validation.
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  66. anndata · metinduraktr-44 bundle
    This skill should be used when working with annotated data matrices in Python, particularly for single-cell genomics analysis, managing experimental measurements with metadata, or handling large-scale biological datasets. Use when tasks involve AnnData objects, h5ad files, single-cell RNA-seq data, or integration with scanpy/scverse tools.
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  67. astropy · metinduraktr-44 bundle
    Comprehensive Python library for astronomy and astrophysics. This skill should be used when working with astronomical data including celestial coordinates, physical units, FITS files, cosmological calculations, time systems, tables, world coordinate systems (WCS), and astronomical data analysis. Use when tasks involve coordinate transformations, unit conversions, FITS file manipulation, cosmological distance calculations, time scale conversions, or astronomical data processing.
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  68. cobrapy · metinduraktr-44 bundle
    Constraint-based metabolic modeling (COBRA). FBA, FVA, gene knockouts, flux sampling, SBML models, for systems biology and metabolic engineering analysis.
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  69. datamol · metinduraktr-44 bundle
    Pythonic wrapper around RDKit with simplified interface and sensible defaults. Preferred for standard drug discovery: SMILES parsing, standardization, descriptors, fingerprints, clustering, 3D conformers, parallel processing. Returns native rdkit.Chem.Mol objects. For advanced control or custom parameters, use rdkit directly.
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  70. denario · metinduraktr-44 bundle
    Multiagent AI system for scientific research assistance that automates research workflows from data analysis to publication. This skill should be used when generating research ideas from datasets, developing research methodologies, executing computational experiments, performing literature searches, or generating publication-ready papers in LaTeX format. Supports end-to-end research pipelines with customizable agent orchestration.
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  71. lamindb · metinduraktr-44 bundle
    This skill should be used when working with LaminDB, an open-source data framework for biology that makes data queryable, traceable, reproducible, and FAIR. Use when managing biological datasets (scRNA-seq, spatial, flow cytometry, etc.), tracking computational workflows, curating and validating data with biological ontologies, building data lakehouses, or ensuring data lineage and reproducibility in biological research. Covers data management, annotation, ontologies (genes, cell types, diseases, tissues), schema validation, integrations with workflow managers (Nextflow, Snakemake) and MLOps platforms (W&B, MLflow), and deployment strategies.
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  72. matchms · metinduraktr-44 bundle
    Mass spectrometry analysis. Process mzML/MGF/MSP, spectral similarity (cosine, modified cosine), metadata harmonization, compound ID, for metabolomics and MS data processing.
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  73. medchem · metinduraktr-44 bundle
    Medicinal chemistry filters. Apply drug-likeness rules (Lipinski, Veber), PAINS filters, structural alerts, complexity metrics, for compound prioritization and library filtering.
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  74. molfeat · metinduraktr-44 bundle
    Molecular featurization for ML (100+ featurizers). ECFP, MACCS, descriptors, pretrained models (ChemBERTa), convert SMILES to features, for QSAR and molecular ML.
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  75. pydicom · metinduraktr-44 bundle
    Python library for working with DICOM (Digital Imaging and Communications in Medicine) files. Use this skill when reading, writing, or modifying medical imaging data in DICOM format, extracting pixel data from medical images (CT, MRI, X-ray, ultrasound), anonymizing DICOM files, working with DICOM metadata and tags, converting DICOM images to other formats, handling compressed DICOM data, or processing medical imaging datasets. Applies to tasks involving medical image analysis, PACS systems, radiology workflows, and healthcare imaging applications.
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  76. seaborn · metinduraktr-44 bundle
    Statistical visualization. Scatter, box, violin, heatmaps, pair plots, regression, correlation matrices, KDE, faceted plots, for exploratory analysis and publication figures.
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  77. code-review · metinduraktr-44
    Perform code reviews following Sentry engineering practices. Use when reviewing pull requests, examining code changes, or providing feedback on code quality. Covers security, performance, testing, and design review.
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  78. cf-crawl · metinduraktr-44
    Crawl entire websites using Cloudflare Browser Rendering /crawl API. Initiates async crawl jobs, polls for completion, and saves results as markdown files. Useful for ingesting documentation sites, knowledge bases, or any web content into your project context. Requires CLOUDFLARE_ACCOUNT_ID and CLOUDFLARE_API_TOKEN environment variables.
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  79. planning · metinduraktr-44
    Create and manage persistent markdown planning files for structured task execution. Use when the user asks to "create a plan", "track progress", "start a research project", or when a task requires more than 5 tool calls and needs structured phase tracking to stay focused and avoid goal drift.
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  80. gepetto · metinduraktr-44 bundle
    Creates detailed, sectionized implementation plans through research, stakeholder interviews, and multi-LLM review. Use when planning features that need thorough pre-implementation analysis.
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  81. llm-ops · metinduraktr-44
    LLM Operations -- RAG, embeddings, vector databases, fine-tuning, prompt engineering avancado, custos de LLM, evals de qualidade e arquiteturas de IA para producao.
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  82. postgresql · metinduraktr-44
    Design a PostgreSQL-specific schema. Covers best-practices, data types, indexing, constraints, performance patterns, and advanced features
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  83. using-neon · metinduraktr-44 bundle
    Guides and best practices for working with Neon Serverless Postgres. Covers getting started, local development with Neon, choosing a connection method, Neon features, authentication (@neondatabase/auth), PostgREST-style data API (@neondatabase/neon-js), Neon CLI, and Neon's Platform API/SDKs. Use for any Neon-related questions.
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  84. angular · metinduraktr-44 bundle
    Modern Angular (v20+) expert with deep knowledge of Signals, Standalone Components, Zoneless applications, SSR/Hydration, and reactive patterns.
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  85. cpp-pro · metinduraktr-44 bundle
    Write idiomatic C++ code with modern features, RAII, smart pointers, and STL algorithms. Handles templates, move semantics, and performance optimization.
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  86. graphql · metinduraktr-44
    GraphQL gives clients exactly the data they need - no more, no less. One endpoint, typed schema, introspection. But the flexibility that makes it powerful also makes it dangerous. Without proper controls, clients can craft queries that bring down your server. This skill covers schema design, resolvers, DataLoader for N+1 prevention, federation for microservices, and client integration with Apollo/urql. Key insight: GraphQL is a contract. The schema is the API documentation. Design it carefully.
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  87. php-pro · metinduraktr-44
    Write idiomatic PHP code with generators, iterators, SPL data structures, and modern OOP features. Use PROACTIVELY for high-performance PHP applications.
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  88. pocketbase-hooks · metinduraktr-44
    Server-side JavaScript hooks for PocketBase (pb_hooks). Use when writing custom routes, event hooks, cron jobs, sending emails, making HTTP requests, querying the database, or extending PocketBase with server-side logic. Covers the goja ES5 runtime, routing, middleware, all event hooks, DB queries, record operations, and global APIs.
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  89. kaizen · metinduraktr-44
    Guide for continuous improvement, error proofing, and standardization. Use this skill when the user wants to improve code quality, refactor, or discuss process improvements.
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  90. linear · metinduraktr-44
    Manage issues, projects & team workflows in Linear. Use when the user wants to read, create or updates tickets in Linear.
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  91. nowait-reasoning-optimizer · metinduraktr-44 bundle
    Implements the NOWAIT technique for efficient reasoning in R1-style LLMs. Use when optimizing inference of reasoning models (QwQ, DeepSeek-R1, Phi4-Reasoning, Qwen3, Kimi-VL, QvQ), reducing chain-of-thought token usage by 27-51% while preserving accuracy. Triggers on "optimize reasoning", "reduce thinking tokens", "efficient inference", "suppress reflection tokens", or when working with verbose CoT outputs.
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  92. railway-environment · metinduraktr-44
    Query, stage, and apply configuration changes for Railway environments. Use for ANY variable or env var operations, service configuration (source, build settings, deploy settings), lifecycle (delete service), and applying changes. Prefer over railway-status skill for any configuration or variable queries.
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  93. arboreto · metinduraktr-44 bundle
    Infer gene regulatory networks (GRNs) from gene expression data using scalable algorithms (GRNBoost2, GENIE3). Use when analyzing transcriptomics data (bulk RNA-seq, single-cell RNA-seq) to identify transcription factor-target gene relationships and regulatory interactions. Supports distributed computation for large-scale datasets.
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  94. deepchem · metinduraktr-44 bundle
    Molecular machine learning toolkit. Property prediction (ADMET, toxicity), GNNs (GCN, MPNN), MoleculeNet benchmarks, pretrained models, featurization, for drug discovery ML.
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  95. diffdock · metinduraktr-44 bundle
    Diffusion-based molecular docking. Predict protein-ligand binding poses from PDB/SMILES, confidence scores, virtual screening, for structure-based drug design. Not for affinity prediction.
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  96. fluidsim · metinduraktr-44 bundle
    Framework for computational fluid dynamics simulations using Python. Use when running fluid dynamics simulations including Navier-Stokes equations (2D/3D), shallow water equations, stratified flows, or when analyzing turbulence, vortex dynamics, or geophysical flows. Provides pseudospectral methods with FFT, HPC support, and comprehensive output analysis.
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  97. histolab · metinduraktr-44 bundle
    Digital pathology image processing toolkit for whole slide images (WSI). Use this skill when working with histopathology slides, processing H&E or IHC stained tissue images, extracting tiles from gigapixel pathology images, detecting tissue regions, segmenting tissue masks, or preparing datasets for computational pathology deep learning pipelines. Applies to WSI formats (SVS, TIFF, NDPI), tile-based analysis, and histological image preprocessing workflows.
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  98. networkx · metinduraktr-44 bundle
    Comprehensive toolkit for creating, analyzing, and visualizing complex networks and graphs in Python. Use when working with network/graph data structures, analyzing relationships between entities, computing graph algorithms (shortest paths, centrality, clustering), detecting communities, generating synthetic networks, or visualizing network topologies. Applicable to social networks, biological networks, transportation systems, citation networks, and any domain involving pairwise relationships.
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  99. pydeseq2 · metinduraktr-44 bundle
    Differential gene expression analysis (Python DESeq2). Identify DE genes from bulk RNA-seq counts, Wald tests, FDR correction, volcano/MA plots, for RNA-seq analysis.
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  100. pyhealth · metinduraktr-44 bundle
    Comprehensive healthcare AI toolkit for developing, testing, and deploying machine learning models with clinical data. This skill should be used when working with electronic health records (EHR), clinical prediction tasks (mortality, readmission, drug recommendation), medical coding systems (ICD, NDC, ATC), physiological signals (EEG, ECG), healthcare datasets (MIMIC-III/IV, eICU, OMOP), or implementing deep learning models for healthcare applications (RETAIN, SafeDrug, Transformer, GNN).
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