Results for “codex”

Extract and preprocess tiles from whole-slide images (WSI) with histolab — OpenSlide-backed slide loading, tissue detection and masks, Random/Grid/Score tile extraction, and image/morphological filters for H&E preprocessing. Use when the user needs lightweight WSI slide preprocessing — building tile datasets for ML training, tissue segmentation, or quick tile-based inspection of histopathology slides. For end-to-end computational-pathology, deep-learning model training, nucleus segmentation, or multiplexed/spatial-proteomics (CODEX, Vectra) pipelines prefer alterlab-pathml instead. Part of the AlterLab Academic Skills suite.

Run full computational-pathology workflows with PathML — whole-slide-image (WSI) analysis across 160+ slide formats, multiplexed immunofluorescence (CODEX, Vectra, MERFISH), nucleus segmentation/classification (HoVer-Net, HACTNet), tissue- and cell-graph construction, HDF5 dataset management, and deep-learning model training on pathology data. Use when the user builds end-to-end deep-learning pathology pipelines, analyzes multiplexed or spatial-proteomics slides, or segments nuclei. For lightweight H&E slide preprocessing, tissue masking, or plain Random/Grid/Score tile extraction prefer alterlab-histolab instead. Part of the AlterLab Academic Skills suite.

21-rule prose review workflow for technical and academic Markdown/LaTeX excerpts. Use when the user asks for muxing-style-review, wants a complete agent-style check combining check-human.md with agent-style audit-only evidence, wants a compact-rule check, wants a DeepSeek/Codex manuscript draft checked for clarity, evidence, citation discipline, terminology, AI-tell prose, or wants an A/B draft comparison. Prefer a dedicated review subagent when available for non-trivial reviews. Use the sibling style-review skill for the upstream post-hoc audit/polish workflow.

Pair a remote AI agent with your browser. One command generates a setup key and prints instructions the other agent can follow to connect. Works with OpenClaw, Hermes, Codex, Cursor, or any agent that can make HTTP requests. The remote agent gets its own tab with scoped access (read+write by default, admin on request). Use when asked to "pair agent", "connect agent", "share browser", "remote browser", "let another agent use my browser", or "give browser access". (gstack) Voice triggers (speech-to-text aliases): "pair agent", "connect agent", "share my browser", "remote browser access".

Use the public `orca` CLI to operate Orca-managed worktrees, folder contexts, terminals, repos, automations, worktree comments, and the browser embedded inside the Orca app. Use when the user says "$orca-cli", "use orca cli", "Orca worktree", "child worktree", "cardStatus", "spawn codex/claude in a worktree", "read/wait/send Orca terminal", "terminal send", "full handoff", "handover", "give this to another agent", "another worktree", "Orca browser", or "control the browser inside Orca". Prefer this over raw `git worktree`, ad hoc PTYs, Playwright, or Computer Use when the task touches Orca-managed state. Use Computer Use for browser windows, webviews, or desktop UI outside Orca's embedded browser.

Security audit and vulnerability scanner for AI agent skills before installation. Use when: (1) evaluating a skill from an untrusted source, (2) auditing a skill directory or git repo URL for malicious code, (3) pre-install security gate for Claude Code plugins, OpenClaw skills, or Codex skills, (4) scanning Python scripts for dangerous patterns like os.system, eval, subprocess, network exfiltration, (5) detecting prompt injection in SKILL.md files, (6) checking dependency supply chain risks, (7) verifying file system access stays within skill boundaries. Triggers: "audit this skill", "is this skill safe", "scan skill for security", "check skill before install", "skill security check", "skill vulnerability scan".

Integrate services or agent harnesses with the 33GOD Bloodbank event bus. Covers schemas in Bloodbank schemas/ and docs/event-naming.md, producing events (NATS preferred; Dapr, HTTP /publish, hookd_bridge alternatives), consuming events (NATS, Dapr, FastStream, event-toaster), and agent hook wiring through the canonical services/agent-hooks publisher. Use for event publish/consume, authoring schemas, integrating harnesses (Claude Code, Copilot CLI, OpenCode, Cursor, Aider, Codex CLI, Hermes), or debugging missing envelopes. Triggers: bloodbank, event bus, publish, subscribe, NATS subject, holyfields legacy, CloudEvents, event-toaster, ntfy.delo.sh/bloodbank, bloodbank.v1.agent.session.started, bloodbank.v1.agent.tool.completed, bloodbank.cmd.v1.agent.invocation.start. Skip for generic brokers, n8n, hindsight memory, or non-event-bus 33GOD.

Drive CodeBurn, a free open-source local-first CLI/TUI/web/menubar tool that reads the session files already on disk from 40 AI coding tools (Claude Code, Codex, Cursor, Gemini CLI, Grok, OpenCode, and more) and breaks down token usage and dollar cost by task, model, tool, and project. Use when the user wants to see where their AI coding spend went, find and fix token waste in a Claude Code / agent setup, cap a session's budget before it runs away, compare which model is actually worth its price, check whether AI spend shipped or was reverted, or wire live usage/savings data into an agent over MCP. Triggers on: "codeburn", "npx codeburn", "AI token usage", "AI coding cost", "where did my Claude spend go", "codeburn optimize", "codeburn guard", "codeburn compare models", "codeburn yield", "token waste in CLAUDE.md", "AI spend dashboard".

Drive Palmier Pro, an open source AI-native macOS video editor (Swift, SwiftUI/AppKit, AVFoundation) that exposes its timeline as an MCP server at `http://127.0.0.1:19789/mcp` so Claude Code/Desktop, Cursor, or Codex can read and edit a project's tracks, clips, media, transcript, captions, color/effects, and trigger generative AI (video/image/audio) requests side-by-side with a human editor. Use when the user wants to connect an agent to Palmier Pro's MCP server, call its timeline/clip/media/generation tools (`get_timeline`, `add_clips`, `move_clips`, `generate_video`, ...), build/run/test the Swift app from source, or debug the MCP tool surface in `ToolDefinitions.swift`/`ToolExecutor+*.swift`. Triggers on: "palmier pro", "palmier-pro", "AI video editor MCP", "connect Claude to my video editor", "palmier MCP server", "edit my timeline with an agent", "swift build PalmierPro", "palmier-pro mcpb", "manage_project"/"get_timeline"/"add_clips" tool.