Results for “biomarker”

Simulates meiotic recombination to produce offspring genomes from parent pairs, modeling Mendelian segregation, de novo mutation, sex determination, trait inference, and clinical evaluation against a disease registry.

Use when working from the local Biomni repository to run agent-style biomedical tasks or inspect Biomni's biomedical tool modules and examples.

Processes and analyzes multiple physiological signals (ECG, respiration, EDA, EMG, PPG, EOG) together using NeuroKit2, including cross-signal features like RSA and event-related analysis.

Provides a standardized interface for ingesting raw data across domains such as genomics, network analysis, document review, and spatial mapping, converting it into semantic vectors for agent use.

Framework autônomo de agente de IA biomédica para executar tarefas de pesquisa complexas em genômica, descoberta de fármacos, biologia molecular e análise clínica. Use esta skill ao conduzir pesquisa biomédica em múltiplas etapas, incluindo design de triagem CRISPR, análise de RNA-seq de células únicas, previsão ADMET, interpretação GWAS, diagnóstico de doenças raras ou otimização de protocolos de laboratório. Aproveita o raciocínio de LLM com execução de código e bancos de dados biomédicos integrados.

Score a clinical ASR manifest against a chosen NIM, produce a five-section KER leaderboard, and route the user via a post-eval decision tree.

Assesses genome, transcriptome, and protein completeness with BUSCO v6, automatically resolving the correct lineage from an organism description and generating reproducible reports.

Analyzes biochemical processes, including enzyme kinetics, metabolic pathways, and biomolecule characterization, with practical techniques and examples.

Publish and consume blockchain-verified trading signals on Base. Register as a signal provider, publish trades with transaction hash proof, and subscribe to top performers via REST API.

Annotates single-cell RNA-seq data by scoring marker genes, transferring labels with CellTypist, or reasoning over cluster markers with an LLM.

Annotates single-cell RNA-seq data by scoring marker genes, transferring labels with CellTypist, or reasoning over marker lists with an LLM.

Reranking retrieved documents with cross-encoders and LLM rerankers. Cohere Rerank v3, Voyage rerank-2, BGE reranker, ColBERT late interaction, Jina reranker. Cost and latency tradeoffs, top-K in / top-N out strategy. USE WHEN: user mentions "rerank", "reranker", "cross-encoder", "Cohere Rerank", "Voyage rerank", "BGE reranker", "ColBERT", "Jina reranker", "bi-encoder" DO NOT USE FOR: initial retrieval - use `advanced-retrieval` or `hybrid-search`; query rewriting - use `query-transformations`; agent decisions - use `agentic-rag`

Predict molecular properties, train graph neural networks, and run drug discovery workflows using DeepChem's featurizers, models, and MoleculeNet benchmarks.

Perform fast genomic interval operations (overlap, nearest, merge, coverage, cluster, complement, subtract, count-overlaps), multi-format bioinformatics I/O, DataFusion SQL, and pileup on Polars DataFrames via the polars-bio library, serving as a scalable alternative to bioframe and bedtools.

Run full computational-pathology workflows with PathML — whole-slide-image (WSI) analysis across 160+ slide formats, multiplexed immunofluorescence (CODEX, Vectra, MERFISH), nucleus segmentation/classification (HoVer-Net, HACTNet), tissue- and cell-graph construction, HDF5 dataset management, and deep-learning model training on pathology data. Use when the user builds end-to-end deep-learning pathology pipelines, analyzes multiplexed or spatial-proteomics slides, or segments nuclei. For lightweight H&E slide preprocessing, tissue masking, or plain Random/Grid/Score tile extraction prefer alterlab-histolab instead. Part of the AlterLab Academic Skills suite.

Translates raw genomic data into personalized health, longevity, and pharmacogenomic protocols for AI agents.

`analysis-agent`/`task-agent`/`review-agent`: primary-Skill-selected for logs, metrics, traces, alerts, SLI/SLO, or diagnostics; never task owner; skip without signal impact.