Results for “hdbscan”

Extract and preprocess tiles from whole-slide images (WSI) with histolab — OpenSlide-backed slide loading, tissue detection and masks, Random/Grid/Score tile extraction, and image/morphological filters for H&E preprocessing. Use when the user needs lightweight WSI slide preprocessing — building tile datasets for ML training, tissue segmentation, or quick tile-based inspection of histopathology slides. For end-to-end computational-pathology, deep-learning model training, nucleus segmentation, or multiplexed/spatial-proteomics (CODEX, Vectra) pipelines prefer alterlab-pathml instead. Part of the AlterLab Academic Skills suite.

Process whole slide images for digital pathology: detect tissue, extract tiles, and prepare datasets for deep learning pipelines.

Trains and fine-tunes vision models for object detection, image classification, and segmentation using Hugging Face Transformers on cloud GPUs, with automatic dataset validation and Hub persistence.

Import object detection models from HuggingFace or NVIDIA NGC into a DeepStream pipeline with automated ONNX download, TensorRT engine build, custom parser, multi-stream benchmark, and PDF report generation.

Resolves, generates, and operates on media assets (audio, images, icons, logos, voice, color grades, LUTs) for HyperFrames projects, using a local cache and the HeyGen CLI for free-usage catalog search and TTS.

Selects the correct SageMaker serving container image URI for HuggingFace model deployments, prioritizing HuggingFace-curated Deep Learning Containers over generic alternatives.

Lightweight WSI tile extraction and preprocessing. Use for basic slide processing tissue detection, tile extraction, stain normalization for H&E images. Best for simple pipelines, dataset preparation, quick tile-based analysis. For advanced spatial proteomics, multiplexed imaging, or deep learning pipelines use pathml.

Implements a Python function that converts an RGB image to HSV color space and extracts a specified channel (H, S, or V), including handling to convert the image to uint8 type to avoid OpenCV depth errors.

Pitfalls, examples, and edge cases for Hermes Kanban workers. The lifecycle itself is auto-injected into every worker's system prompt as KANBAN_GUIDANCE (from agent/prompt_builder.py); this skill is what you load when you want deeper detail on specific scenarios.

Provides detailed guidance on Hermes Kanban worker lifecycle, including workspace handling, handoff patterns, retry diagnostics, and edge cases for dispatched workers.

Globus CLI workflow for staging HuBMAP CODEX datasets from remote endpoints to HiPerGator

HuggingFace hf CLI: search/download/upload models, datasets.

Pitfalls, examples, and edge cases for Hermes Kanban workers. The lifecycle itself is auto-injected into every worker's system prompt as KANBAN_GUIDANCE (from agent/prompt_builder.py); this skill is what you load when you want deeper detail on specific scenarios.

Operate Hugging Face Hub repositories, models, datasets, and Spaces via the hf CLI, including downloads, uploads, authentication, and compute jobs.

4-stage funnel that screens all 500+ Hyperliquid perps down to the top trading opportunities. Scores setups 0-400 across smart money, market structure, technicals, and funding. BTC macro filter, hourly trend gate (counter-trend = hard skip), cross-scan momentum tracking. Near-zero LLM tokens — all computation in Python. Use when scanning for new trading opportunities on Hyperliquid, evaluating setups, or checking market conditions.

Pitfalls, examples, and edge cases for Hermes Kanban workers. The lifecycle itself is auto-injected into every worker's system prompt as KANBAN_GUIDANCE (from agent/prompt_builder.py); this skill is what you load when you want deeper detail on specific scenarios.

Provides a standardized interface for ingesting raw data across domains such as genomics, network analysis, document review, and spatial mapping, converting it into semantic vectors for agent use.

HuggingFace hf CLI: search/download/upload models, datasets.

Full-featured computational pathology toolkit. Use for advanced WSI analysis including multiplexed immunofluorescence (CODEX, Vectra), nucleus segmentation, tissue graph construction, and ML model training on pathology data. Supports 160+ slide formats. For simple tile extraction from H&E slides, histolab may be simpler.

Nonlinear dimensionality reduction with UMAP — fast manifold learning for 2D/3D visualization, clustering preprocessing (e.g., HDBSCAN), and supervised or parametric UMAP. Use when projecting high-dimensional data to low dimensions for visualization, embedding generation, or as a preprocessing step before clustering. Part of the AlterLab Academic Skills suite.