Packs
1 packResults for “heatmaps”
8 skillsnv-segment-ctmr
Runs NV-Segment-CTMR segmentation on CT or MRI NIfTI volumes and records label-map evidence.
2.2k · bundle
pathml
Loads and processes whole-slide pathology images, builds spatial graphs, trains deep learning models, and analyzes multiplexed immunofluorescence data across 160+ slide formats.
253 · bundle
shap
Explain machine learning model predictions using SHAP values, compute feature importance, and generate visualizations including waterfall, beeswarm, bar, scatter, force, and heatmap plots.
30.2k · bundle
pathml
Full-featured computational pathology toolkit. Use for advanced WSI analysis including multiplexed immunofluorescence (CODEX, Vectra), nucleus segmentation, tissue graph construction, and ML model training on pathology data. Supports 160+ slide formats. For simple tile extraction from H&E slides, histolab may be simpler.
3 · bundle
hexagon-complexity-mapper
Map a complex topic by placing factors on hexagonal tiles where adjacency signals a claimed relationship. Use when students need to surface hidden connections in a system before analysis or action.
0
vega
Create data-driven charts with Vega-Lite and Vega, covering bar, line, scatter, heatmap, area, radar, and word cloud visualizations from structured data arrays.
54 · bundle
hermes-image-generation
Configure, troubleshoot, and use Hermes image generation — all 5 built-in providers (FAL, OpenAI, OpenAI-Codex, xAI, Krea), model catalogs, env vars, and .env location gotchas.
28 · bundle
globus-dataset-staging
Globus CLI workflow for staging HuBMAP CODEX datasets from remote endpoints to HiPerGator
3