Results for “morphosyntax”

Convert chemical structures (SMILES or RDKit molecules) into numerical representations for machine learning, covering 100+ featurizers including ECFP, MACCS, descriptors, and pretrained models like ChemBERTa, with support for QSAR modeling and virtual screening.

Convert chemical structures (SMILES or RDKit molecules) into numerical representations for machine learning using 100+ featurizers, including ECFP, MACCS, descriptors, and pretrained models like ChemBERTa.

Orchestrates three frontier models to debate a question and synthesizes their best insights into a single superior answer.

Use kordoc for agent-native HWP/HWPX document parsing, JSON extraction, diffing, form-field extraction, and Markdown→HWPX reverse conversion (read/convert only — for binary editing use rhwp-edit).

Run full computational-pathology workflows with PathML — whole-slide-image (WSI) analysis across 160+ slide formats, multiplexed immunofluorescence (CODEX, Vectra, MERFISH), nucleus segmentation/classification (HoVer-Net, HACTNet), tissue- and cell-graph construction, HDF5 dataset management, and deep-learning model training on pathology data. Use when the user builds end-to-end deep-learning pathology pipelines, analyzes multiplexed or spatial-proteomics slides, or segments nuclei. For lightweight H&E slide preprocessing, tissue masking, or plain Random/Grid/Score tile extraction prefer alterlab-histolab instead. Part of the AlterLab Academic Skills suite.

Pythonic wrapper around RDKit for cheminformatics, simplifying SMILES parsing, standardization, descriptors, fingerprints, clustering, 3D conformers, and parallel processing while returning native rdkit.Chem.Mol objects.

Train Mixture of Experts (MoE) models using DeepSpeed or HuggingFace. Use when training large-scale models with limited compute (5× cost reduction vs dense models), implementing sparse architectures like Mixtral 8x7B or DeepSeek-V3, or scaling model capacity without proportional compute increase. Covers MoE architectures, routing mechanisms, load balancing, expert parallelism, and inference optimization.

Implements Manifold-Constrained Hyper-Connections (mHC) using Doubly Stochastic Matrices to improve deep learning stability.

Comprehensive guide for creating software diagrams using Mermaid syntax. Use when users need to create, visualize, or document software through diagrams including class diagrams (domain modeling, object-oriented design), sequence diagrams (application flows, API interactions, code execution), flowcharts (processes, algorithms, user journeys), entity relationship diagrams (database schemas), C4 architecture diagrams (system context, containers, components), state diagrams, git graphs, pie charts, gantt charts, or any other diagram type. Triggers include requests to "diagram", "visualize", "model", "map out", "show the flow", or when explaining system architecture, database design, code structure, or user/application flows.

Generate images with Flux 2 Klein (Black Forest Labs' distilled fast variant of Flux 2) on RunComfy — bundled with the model's documented prompting patterns so the skill gets sharper output than naive prompting against the same model. Documents Flux 2 Klein's strengths (sub-second latency, multi-reference brand styling, declarative subject-first prompts), the step-count strategy (4–8 for fast iteration, ~25 for polish), the 9B vs 4B variant trade-off, and when to route to Flux 2 Pro / Seedream 5 / GPT Image 2 instead. Calls `runcomfy run blackforestlabs/flux-2-klein/9b/text-to-image` (or `/4b/`) through the local RunComfy CLI. Triggers on "flux 2 klein", "flux-2-klein", "flux klein", "BFL flux 2", or any explicit ask to generate with this model.

Control LLM output with regex and grammars to guarantee valid JSON, XML, or code generation, enforce structured formats, and build multi-step workflows using Microsoft Research's Guidance framework.

Use kordoc for agent-native HWP/HWPX document parsing, JSON extraction, diffing, form-field extraction, and Markdown→HWPX reverse conversion (read/convert only — for binary editing use rhwp-edit).

Query the Monarch Initiative knowledge graph for disease-gene-phenotype associations across species, integrating OMIM, ORPHANET, HPO, ClinVar, and model organism databases. Use when discovering rare disease genes, mapping phenotypes to genes, modeling disease across species, or looking up HPO terms. Part of the AlterLab Academic Skills suite.