Results for “umap”

26 skills

Perform nonlinear dimensionality reduction, 2D/3D embeddings, clustering preprocessing, supervised or semi-supervised UMAP, DensMAP, AlignedUMAP, and Parametric UMAP workflows using the umap-learn library.

30.2k · bundle

Reduce high-dimensional data with UMAP for visualization, clustering preprocessing, and supervised or semi-supervised learning, including parameter tuning guidance.

Nonlinear dimensionality reduction with UMAP — fast manifold learning for 2D/3D visualization, clustering preprocessing (e.g., HDBSCAN), and supervised or parametric UMAP. Use when projecting high-dimensional data to low dimensions for visualization, embedding generation, or as a preprocessing step before clustering. Part of the AlterLab Academic Skills suite.

Analyze single-cell RNA-seq data with Scanpy, covering quality control, normalization, dimensionality reduction, clustering, marker gene identification, and visualization.

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Analyze single-cell RNA-seq data with Scanpy, covering quality control, normalization, clustering, marker gene identification, visualization, and trajectory analysis.

Azure Aigateway

Configure Azure API Management as an AI Gateway to govern AI models, MCP tools, and agents with policies for caching, rate limiting, content safety, and cost control.

Run standard single-cell RNA-seq analysis pipelines: QC, normalization, dimensionality reduction, clustering, differential expression, and visualization using Scanpy.

30.2k · bundle

MCP Security Audit

Audit MCP server configurations for security issues including secrets exposure, shell injection, unpinned dependencies, and unapproved servers.

Universal Simulator.Company platform assistant. Use when the user asks anything about Simulator.Company, wants to work with the Simulator API, mentions actors, forms, graphs, layers, accounts, transactions, or any other Simulator entity. Also use when the user asks to "use simulator", "call the simulator API", or needs to manage business processes in Simulator. This skill provides deep knowledge of the platform model and guides you to use the simulator MCP tools correctly.

Unity MCP Orchestrator

Operate the Unity Editor through MCP tools and resources, covering scene management, script editing, testing, and automation workflows.

Make a web app agent-ready — propose a WebMCP tool manifest, integrate, verify in a real browser, heal; unrelated code stays untouched. Use for "webmcpify", "add WebMCP", or "expose app actions to AI agents".

agentskillexchange

Unified AI System Gateway

Enhances plain-language requests into structured, reviewable prompts and inspects a self-hosted MCP gateway with provider-free defaults.

Official Puppeteer Model Context Protocol Server for browser automation.

Auth Strategy Designer

Design authentication and authorization strategy for a product or MVP. Use when the team needs sign-in methods, session model, user/workspace membership, roles, tenant boundaries, invitation flows, or permission enforcement plans.

Exact rendered-UI feedback router → choose copy-paste review, watch-loop sync, self-driving critique, or platform setup. MCP: npx add-mcp "npx -y agentation-mcp server"

Security patterns for MCP servers including OAuth 2.0, rate limiting, input validation, and audit loggingUse when "mcp security, mcp authentication, mcp oauth, mcp rate limit, secure mcp server, mcp, security, oauth, authentication, rate-limiting, validation" mentioned.

Guides the creation of high-quality MCP servers that enable LLMs to interact with external services through well-designed tools, covering planning, implementation, testing, and evaluation across multiple programming languages.

MCP Create Adaptive Cards

Add Adaptive Card response templates to MCP-based API plugins for visual data presentation in Microsoft 365 Copilot.

Integrates Clock Address Naming with MCP agents to locally stamp, verify, and log tool outputs with hashes and timestamps.

Generates creative launch blueprints for memecoins on pump.fun, including names, symbols, narratives, visual themes, and buyback strategies, with safety guardrails and mandatory disclaimers.

Openai Automation

Automate OpenAI API operations: generate text and multimodal responses with structured output, create embeddings, generate images, and list models via the Composio MCP integration.

Loops Bounded Agent Loop Orchestration

Orchestrates bounded, governed iteration loops over existing agent commands and offices, with explicit stopping conditions, checkpoints, and honest terminal states.

Agent wallet, identity, and paid tools in one package. Register an agent, fund it via Stripe or USDC, then use the balance for web search, AI image generation, AI video generation, AI music creation, X/Twitter search, email send/receive, SMS and voice calls, contacts management, and 100+ LLM models. The funding and identity layer for autonomous agents that need to spend money, send messages, make phone calls, or call paid APIs.

nimoqup046-collab

Analyze single-cell RNA-seq data with Scanpy, covering quality control, normalization, clustering, marker gene identification, visualization, and trajectory analysis.

lucaspmarie-a11y

Analyze single-cell RNA-seq data with Scanpy, covering quality control, normalization, clustering, marker gene identification, visualization, and trajectory analysis.

Runs standard single-cell RNA-seq analysis with Scanpy, covering QC, normalization, dimensionality reduction, clustering, marker identification, visualization, and conversion of R single-cell formats to h5ad.