Results for “basescan”

Scan Types

Read and write genomic alignment and variant files in Python with pysam (htslib bindings) — SAM/BAM/CRAM alignments, VCF/BCF variants, and FASTA/FASTQ sequences, plus region extraction and per-base coverage/pileup. Use when scripting NGS data-processing pipelines that parse, filter, index, or compute coverage over BAM/CRAM/VCF files. Part of the AlterLab Academic Skills suite.

Bootstraps a BSP customization workspace for NVIDIA Jetson, including the Linux_for_Tegra overlay tracker, bsp_sources mono-tree, and Crosstool-NG toolchain.

Inspects the host system, assesses platform compatibility, and recommends the correct Holoscan SDK installation method, then delegates to a method-specific install skill.

Discover, select, and run Holoscan Sensor Bridge example applications on a connected devkit over SSH, filtering by platform, board type, and sensors.

Install the Holoscan SDK C++ runtime and headers on Ubuntu using NVIDIA's apt repository, with automatic CUDA variant detection and verification via bundled examples.

Detect memory errors like buffer overflows and use-after-free bugs in C/C++ code during fuzzing and testing using AddressSanitizer.

Genomic file toolkit. Read/write SAM/BAM/CRAM alignments, VCF/BCF variants, FASTA/FASTQ sequences, extract regions, calculate coverage, for NGS data processing pipelines.

Train reinforcement learning agents using PPO, SAC, DQN, TD3, DDPG, and A2C algorithms with a scikit-learn-like API. Supports custom Gymnasium environments, vectorized environments, callbacks, and model persistence.

Discover and run Holoscan Sensor Bridge example applications on a connected devkit. Filters available apps by the user's platform, HSB software version, board type, and sensors. Supports timed execution, failure analysis, code-edit suggestions, and iterative re-runs.

Genomic file toolkit. Read/write SAM/BAM/CRAM alignments, VCF/BCF variants, FASTA/FASTQ sequences, extract regions, calculate coverage, for NGS data processing pipelines.

Read, write, and manipulate genomic datasets including SAM/BAM/CRAM alignments, VCF/BCF variants, and FASTA/FASTQ sequences using a Pythonic interface to htslib.

Genomic file toolkit. Read/write SAM/BAM/CRAM alignments, VCF/BCF variants, FASTA/FASTQ sequences, extract regions, calculate coverage, for NGS data processing pipelines.

Read, write, and analyze genomic datasets including SAM/BAM/CRAM alignments, VCF/BCF variants, and FASTA/FASTQ sequences using a Pythonic interface to htslib.

Base64-encode a string or file content

Run differential gene expression analysis on bulk RNA-seq count matrices with PyDESeq2, the Python port of DESeq2 — size-factor normalization, dispersion estimation, Wald tests, FDR (Benjamini-Hochberg) correction, and volcano/MA plots. Use when identifying differentially expressed genes between conditions from raw bulk RNA-seq counts. Part of the AlterLab Academic Skills suite.

Detect network reconnaissance and port scanning using Suricata and Snort IDS signatures, threshold-based detection rules, and traffic anomaly analysis to identify Nmap, Masscan, and custom scanning activity.

One-shot lifecycle command that chains init → baseline → spawn → eval → merge in a single invocation.

BISON v2.0 — Conviction Holder (Hardened). Top 10 assets by volume. All signals are score contributors — no hard gates. Scanner enters via create_position internally (Wolverine pattern). RatchetStop exits. Thesis exit REMOVED. v2.0: every hard gate converted to score contributor, ensureExecutionAsTaker=false, conviction-scaled margin 25-37%.

PortSwigger deep-dive with exact payloads for every lab variant including zero-day techniques

Generate CycloneDX and SPDX SBOMs from container images and filesystems, scan them for vulnerabilities with Grype, and sign attestations with Cosign for supply-chain trust.

Use when converting compatible BLAST annotation XML/ASN streams into a compact gene-markup-style table for downstream EDirect interval helpers.

Genomic file toolkit. Read/write SAM/BAM/CRAM alignments, VCF/BCF variants, FASTA/FASTQ sequences, extract regions, calculate coverage, for NGS data processing pipelines.

Base64-decode a string and return raw or UTF-8 content

以命理场景为主的八字排盘、黄历查询与大运/流年/流月/流日/流时区间查询技能。用于用户请求“算八字”“四柱排盘”“阳历/农历转八字”“查黄历/宜忌”“查未来10年流年”“查下个月流日/流时”等场景；关键词包括：八字、四柱、命理、大运、流年、流月、流日、流时、时辰、阳历转八字、农历转八字、黄历、宜忌、干支日期。真太阳时换算属于辅助能力，仅在需要校时定盘时使用。 / Bazi-first skill for charting, Chinese almanac lookup, and range queries of decade/annual/monthly/daily/hourly luck cycles. Use for requests like “calculate my Bazi”, “convert solar/lunar datetime to Bazi”, “check huangli”, “query next 10 years”, and “check next month daily/hourly cycles”. Keywords focus on Bazi/Four Pillars and fortune-cycle analysis; true-solar-time conversion is an auxiliary step only when time correction is required.

Discover and run Holoscan Sensor Bridge example applications on a connected devkit. Filters available apps by the user's platform, HSB software version, board type, and sensors. Supports timed execution, failure analysis, code-edit suggestions, and iterative re-runs.

Complete PortSwigger deep-dive with exact payloads for every lab variant including zero-day techniques