Results for “bed-files”
29 skillsBedtools
Use when performing genome arithmetic on interval files (BED, BAM, BEDGRAPH), including intersection, merging, coverage, format conversion, or sequence extraction.
0 · bundle
Gtars
High-performance toolkit for genomic interval analysis in Rust with Python bindings. Use when working with genomic regions, BED files, coverage tracks, overlap detection, tokenization for ML models, or fragment analysis in computational genomics and machine learning applications.
253 · bundle
Gtars
High-performance toolkit for genomic interval analysis in Rust with Python bindings. Use when working with genomic regions, BED files, coverage tracks, overlap detection, tokenization for ML models, or fragment analysis in computational genomics and machine learning applications.
30.2k · bundle
Tag Bam
Use when you need to annotate BAM alignments with a two-character tag based on overlaps with BED, GFF, or VCF annotation files, such as labeling reads by feature class or interval source.
0 · bundle
More results
Gtars
High-performance toolkit for genomic interval analysis in Rust with Python bindings. Use when working with genomic regions, BED files, coverage tracks, overlap detection, tokenization for ML models, or fragment analysis in computational genomics and machine learning applications.
1 · bundle
Map Bed
Use when you need to apply aggregation functions (sum, mean, count, etc.) to values from overlapping intervals in one file and map them onto intervals from another file.
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Create Readme
Generates a comprehensive, well-structured README.md file for a project by analyzing the workspace and following best practices.
36.2k
Jetson Link Docs
Bind pre-downloaded Jetson reference docs (developer guide, design guide, pinmux, schematics) into the active profile documents block. Use after staging docs on disk; not for downloading.
2.2k · bundle
Memory System
Persistent cross-session memory management. Enables agents to remember user preferences, project conventions, and past decisions across different sessions using a structured MEMORY.md index and topic files.
3
Bids
Organize, query, validate, and convert neuroscience and biomedical data using the Brain Imaging Data Structure (BIDS) standard.
30.2k · bundle
Code Smell
Scans a codebase for Martin Fowler's catalog of code smells, reporting each with location, severity, and refactoring recommendations, and ranks files to build a prioritized refactoring queue.
13
Eightctl
Control Eight Sleep pods (status, temperature, alarms, schedules).
9
Session Handoff
Close a work session without losing what just happened. Write a handoff brief that captures progress, the decisions you made, the unfinished items and their next steps, and the details that would evaporate overnight, then it asks whether to commit or save it, never automatically. Trigger on "wrap up this session", "write a handoff", "close out for the day", "hand this off", "what did we get done", or the end of any working session you might have to resume later.
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Gtars
High-performance toolkit for genomic interval analysis in Rust with Python bindings. Use when working with genomic regions, BED files, coverage tracks, overlap detection, tokenization for ML models, or fragment analysis in computational genomics and machine learning applications.
3 · bundle
Mbed Ble
BLE with Mbed OS. Bluetooth.
2 · bundle
Bench Read
Read artifacts from the shared bench — the workspace where desks leave findings, verdicts, and work products for each other and the operator.
0
Init Profile
Generate `.claude/PROJECT_PROFILE.md` — the project-specific facts that should be loaded into every session (deployment topology, host mapping, env file locations, verification commands). Run once per project after clone.
8
Unit Tests
Systematically adds unit test coverage to existing source files in any project, tracking progress across sessions via scan, plan, and write modes.
0
File Reference
处理和分析用户上传的文件引用,提取关键信息并提供应用建议。适用于解析@符号引用、自然语言引用、提取短剧策划相关信息
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Script Refactorer
Modernizes legacy scripts (bash, Node, Python) by replacing deprecated APIs, adding error handling, converting callbacks to async/await, and improving maintainability. Turns brittle one-off scripts into reliable, documented tools.
10
Eightctl
Control Eight Sleep pods (status, temperature, alarms, schedules).
2 · bundle
Dbs Save
Save the current diagnosis state to disk for cross-session recall, including conclusions, rejected directions, and next steps.
Tpl Dominio Filas Jobs
Template do pack (dominio/15-filas-jobs.md). Orienta o agente em regras de negocio e requisitos de produto alinhado a esse contexto.
10
Bids
> Use this skill when working with Brain Imaging Data Structure (BIDS) datasets: organizing neuroscience and biomedical data (MRI, EEG, MEG, iEEG, PET, microscopy, NIRS, motion capture, EMG, MR spectroscopy, behavioral), querying BIDS layouts, validating compliance, converting DICOM to BIDS, writing metadata sidecars, or creating BIDS derivatives.
2 · bundle
Pickup
Start-of-session context pickup. Reads the latest handoff file and resumes work where the last session left off. Run this at the start of a new session if a handoff file exists.
8
Sessions
Skill for the Sessions area of paddock. 50 symbols across 13 files.
11
Gtars
High-performance toolkit for genomic interval analysis in Rust with Python bindings. Use when working with genomic regions, BED files, coverage tracks, overlap detection, tokenization for ML models, or fragment analysis in computational genomics and machine learning applications.
0 · bundle
Gtars
High-performance toolkit for genomic interval analysis in Rust with Python bindings. Use when working with genomic regions, BED files, coverage tracks, overlap detection, tokenization for ML models, or fragment analysis in computational genomics and machine learning applications.
0 · bundle
Gtars
High-performance toolkit for genomic interval analysis in Rust with Python bindings. Use when working with genomic regions, BED files, coverage tracks, overlap detection, tokenization for ML models, or fragment analysis in computational genomics and machine learning applications.
5 · bundle