Results for “blast”

Review GitHub PRs and GitLab MRs with structured analysis including blast radius, security scanning, test coverage delta, breaking change detection, and performance impact.

Fast CLI/Python queries to 20+ bioinformatics databases. Use for quick lookups: gene info, BLAST searches, AlphaFold structures, enrichment analysis. Best for interactive exploration, simple queries. For batch processing or advanced BLAST use biopython; for multi-database Python workflows use bioservices.

Fast CLI/Python queries to 20+ bioinformatics databases. Use for quick lookups: gene info, BLAST searches, AlphaFold structures, enrichment analysis. Best for interactive exploration, simple queries. For batch processing or advanced BLAST use biopython; for multi-database Python workflows use bioservices.

Use when comparing protein sequences against protein databases for similarity searches, homology detection, or functional annotation.

Kit de ferramentas CLI/Python para consultas rápidas de bioinformática. Preferido para buscas BLAST rápidas. Acesso a 20+ bancos de dados: informações de genes (Ensembl/UniProt), AlphaFold, ARCHS4, Enrichr, OpenTargets, COSMIC, downloads de genoma. Para BLAST avançado/processamento em lote, use biopython. Para integração multi-banco de dados, use bioservices.

Use when converting BLASTN mRNA alignment XML into segmented interval reports and strand-overlap summaries in EDirect pipelines.

Use when performing nucleotide-nucleotide similarity searches to identify homologs, annotate sequences, or compare query sequences against nucleotide databases.

Use when comparing translated nucleotide query sequences against protein databases to identify homologous proteins and potential protein-coding regions.

Fast CLI/Python queries to 20+ bioinformatics databases. Use for quick lookups: gene info, BLAST/BLAT, viral sequence downloads, AlphaFold structures, enrichment analysis, OpenTargets, COSMIC, CELLxGENE, and 8cube mouse specificity/expression data. Best for interactive exploration and simple queries. For batch processing or advanced BLAST use biopython; for multi-database Python workflows use bioservices.

Use when converting compatible BLAST annotation XML/ASN streams into a compact gene-markup-style table for downstream EDirect interval helpers.

Run fast one-liner queries to 20+ bioinformatics databases from the gget CLI or Python — gene info (Ensembl), BLAST, AlphaFold structures, Enrichr enrichment, and more. Use for quick interactive lookups of genes, sequences, structures, or pathways — for batch processing or advanced BLAST use biopython, for multi-database Python workflows use bioservices. Part of the AlterLab Academic Skills suite.

Analyzing pre-change impact across vertical (dependency chains, files) and horizontal (pattern consistency, naming) dimensions. Use to estimate blast radius before a refactor. No code.

Flash a promoted BSP image to a Jetson device in RCM mode using NVIDIA's flash.sh or l4t_initrd_flash.sh toolchain.

Downloads NVIDIA Jetson Linux BSP artifacts (BSP tarball, sample rootfs, public_sources, x-tools, guides) for the active target. Used for Auto Setup; does not extract or edit profiles.

Run static BSP checks and on-target smoke/regression tests on a flashed NVIDIA Jetson device to validate a customized BSP image.

Forces investigation of file dependencies before editing code to prevent cascade failures.

Provides a command-line interface to the bat file viewer, including help, run, info, and status commands.

Load this skill when the user says "prepare base", "prepare-base", or "/prepare-base". Prunes remote tracking references, checks out a base branch, pulls latest, and cleans up local-only feature branches after confirmation.

波总口语输入 → 结构化任务记录 → 同步到副官系统。当波总说"记一下""记录下来""有个任务"或描述要做的事时使用。

Executes structured recovery from a ransomware incident following NIST and CISA frameworks, including environment isolation, forensic evidence preservation, clean infrastructure rebuild, prioritized system restoration from verified backups, credential reset, and validation against re-infection.

Use when the user wants to know what will break if they change something, or needs safety analysis before editing code. Examples: "Is it safe to change X?", "What depends on this?", "What will break?"

Incident Post-Mortem Builder

沈墨（悬疑剧虚构）认知与表达框架（压缩蒸馏）：创伤反杀叙事、时代灰雾、钢琴意象 触发：漫长的季节 等。虚构；禁止犯罪模仿

Provides Python tools for biological computation, including sequence manipulation, file I/O, database access, structural bioinformatics, and phylogenetics.

袁朗（军旅剧虚构）认知与表达框架（压缩蒸馏）：老 A 冷血人设、试探与打磨、精英残酷浪漫 触发：士兵突击 等。虚构

Runs project tests, stages and commits changes with a conventional message, then rebases and pushes to the current branch, stopping on any failure.

Provides reference documentation and code patterns for using Biopython to handle biological sequences, file formats, database access, alignments, structures, and phylogenetics.

Safe refactor planning for Nick's codebases. Use when planning large refactors, reducing blast radius, sequencing cleanup work, or deciding how to improve messy code without breaking product velocity.

Query 20+ bioinformatics databases from the command line or Python for gene information, sequences, protein structures, enrichment analysis, and more.

Query a pre-indexed codebase via CLI to understand structure, find symbols, assess change impact, debug failures, and evaluate PR risk.