Results for “dnanexus”

Validates that a Dynamo deployment's NIXL/UCX/NCCL interconnect is ready for disaggregated serving over RDMA/NVLink. Use after deploying a disagg or multi-node recipe to confirm KV transport is correct, or use troubleshoot for already-failed pods.

Use when the user wants to rename, extract, split, move, or restructure code safely. Examples: "Rename this function", "Extract this into a module", "Refactor this class", "Move this to a separate file"

Use when the user needs to run GitNexus CLI commands like analyze/index a repo, check status, clean the index, generate a wiki, or list indexed repos. Examples: "Index this repo", "Reanalyze the codebase", "Generate a wiki"

Enumerate SMB, WinRM, LDAP, and MSSQL services, validate credentials, spray passwords, and execute commands on remote hosts using NetExec during authorized penetration tests.

Use when the user needs to run GitNexus CLI commands like analyze/index a repo, check status, clean the index, generate a wiki, or list indexed repos. Examples: "Index this repo", "Reanalyze the codebase", "Generate a wiki"

Convex

Produces NetworkX code with explicit graph kind, node identity, edge multiplicity, direction, attribute schema, weight semantics, and algorithm preconditions, including testing.

Use when the user wants to know what will break if they change something, or needs safety analysis before editing code. Examples: "Is it safe to change X?", "What depends on this?", "What will break?"

Conduct authenticated and unauthenticated vulnerability scans using Tenable Nessus to identify known vulnerabilities, misconfigurations, and missing patches, with prioritized remediation guidance.

Query the Cancer Dependency Map (DepMap) for cancer cell line gene dependency scores, drug sensitivity data, and gene effect profiles to identify cancer-specific vulnerabilities, synthetic lethal interactions, and validate oncology drug targets.

Use when the user wants to rename, extract, split, move, or restructure code safely. Examples: "Rename this function", "Extract this into a module", "Refactor this class", "Move this to a separate file"

Use when the user asks how code works, wants to understand architecture, trace execution flows, or explore unfamiliar parts of the codebase. Examples: "How does X work?", "What calls this function?", "Show me the auth flow"

NGS analysis toolkit. BAM to bigWig conversion, QC (correlation, PCA, fingerprints), heatmaps/profiles (TSS, peaks), for ChIP-seq, RNA-seq, ATAC-seq visualization.

Access ClinPGx pharmacogenomics data (the successor to PharmGKB) to query gene-drug interactions, CPIC/DPWG dosing guidelines, drug labels, and pharmacogene records. Use when interpreting pharmacogenes (CYP2D6, CYP2C19, TPMT, DPYD, SLCO1B1), looking up genotype-guided drug dosing, checking PGx drug-safety associations (e.g. HLA-B*57:01 and abacavir), or supporting precision medicine and clinical pharmacogenomics decisions. For star-allele definitions/frequencies see PharmVar; for germline/somatic variant pathogenicity see alterlab-clinvar. Part of the AlterLab Academic Skills suite.

MaxFuse parameter tuning for datasets with large protein:RNA cell ratios (>100:1)

Use when implementing knex functionality with production-grade patterns and safeguards.

Build and manage monorepos with Nx. Use when a user asks to set up a monorepo, manage multiple packages/apps, cache builds, run affected tests, or migrate from Lerna.

Frangi vesselness 3D filter: Ra formula correction, scikit-image deprecations, GPU VRAM guard