Results for “evolutionary-search”

18 skills

Use when searching nucleotide sequences against a nucleotide database using translated protein comparison. Useful for detecting distant evolutionary relationships between nucleotide sequences.

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Build and analyze phylogenetic trees using MAFFT, IQ-TREE 2, and FastTree, with visualization via ETE3 or FigTree for evolutionary analysis, microbial genomics, viral phylodynamics, and molecular clock studies.

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基于 anchor 论文、topic 关键词或当前 wiki 状态，产出一份排好序的候选论文 shortlist，供用户或上游 skill 决定是否进一步 `/ingest`。当用户问 "接下来该读什么"、"找和这篇相似的论文"、"推荐相关工作"、"这个方向周围有什么" 时触发；`/ingest --discover` 也会内部调用本 skill。本身不 ingest，只提出候选。

lucaspmarie-a11y

Provides guidance and patterns for using a vector-powered CLI for semantic file search with a Claude/Codex skill.

Use when filtering Entrez search results by date, organism, publication type, sequence features, or other database-specific criteria in bioinformatics pipelines.

Use when searching NCBI Entrez databases (pubmed, gene, protein, nuccore, snp, geoprofiles) with query strings and field qualifiers to retrieve record UIDs for downstream processing.

theheavenlyd3mon

Fast vector similarity search at billion scale.

capability-evolver

A self-evolution engine for AI agents. Analyzes runtime history to identify improvements and applies protocol-constrained evolution.

Deepsearch deprecated shim

Fan one question out across every connected source and return a single ranked, deduplicated, attributed result set.

Enables semantic file search using vector embeddings from the command line, integrated with Claude/Codex.

Provides guidance and patterns for using a vector-powered CLI for semantic file search with Claude/Codex skills.

Use when inferring maximum-likelihood phylogenetic trees, selecting substitution models, running bootstrap support analyses, or performing partitioned phylogenetic analyses on sequence alignments.

Systematically explore a web application to find bugs and UX issues, producing a structured report with screenshots, repro videos, and detailed steps for each finding.

Vector-powered CLI for semantic file search with a Claude/Codex skill

iamanacarolinarezende

Vector-powered CLI for semantic file search with a Claude/Codex skill

capability-evolver

Analyzes runtime history to identify failures and inefficiencies, then autonomously writes improvements using a protocol-constrained evolution engine. Communicates with EvoMap Hub via a local Proxy mailbox.

Vector-powered CLI for semantic file search with a Claude/Codex skill