Results for “exiftool”

Use when working with VCF/BCF variant files for indexing, manipulation, analysis, or variant calling.

Use when parsing, extracting, or converting XML data from NCBI Entrez or other bioinformatics sources into tab-delimited tables. Use for selecting specific elements, filtering records, and restructuring hierarchical XML into flat formats for downstream analysis.

Use when working with NCBI ASN.1 module files, schema exports, or ASN.1/XML conversion tasks that require the `datatool` command.

Generate Excalidraw diagrams from natural language descriptions, supporting flowcharts, relationship diagrams, mind maps, architecture diagrams, and more. Outputs .excalidraw JSON files that can be opened directly in Excalidraw.

Configures Python projects with modern tooling (uv, ruff, ty) for new projects, scripts, or migrations from legacy tools.

Query and analyze SEC filings using EdgarTools

Expert technology assessment specialist focused on evaluating, testing, and recommending tools, software, and platforms for business use and productivity optimization

Create hand-drawn style diagrams using Excalidraw JSON format. Generate .excalidraw files for architecture diagrams, flowcharts, sequence diagrams, concept maps, and more. Files can be opened at excalidraw.com or uploaded for shareable links.

Extract, parse, and analyze Windows Event Logs (EVTX) using Chainsaw, Hayabusa, and EvtxECmd to detect lateral movement, persistence, and privilege escalation.

Use when extracting INSDSeq XML feature tables into tab-delimited text for downstream parsing or annotation review.

Create hand-drawn style diagrams using Excalidraw JSON format. Generate .excalidraw files for architecture diagrams, flowcharts, sequence diagrams, concept maps, and more. Files can be opened at excalidraw.com or uploaded for shareable links.

Use when performing genome arithmetic on interval files (BED, BAM, BEDGRAPH), including intersection, merging, coverage, format conversion, or sequence extraction.

Use only for developer-facing products; analyze install, quickstart, first success, debugging, and production adoption journeys

Use when printing canned sample NCBI XML, JSON, flatfile, or GFF documents for testing, parser development, or xtract query prototyping.

Use when a GFF file needs bcftools/csq-compatible gene and transcript attributes before consequence annotation.

Use when collecting sorted UID lists from EDirect query sources such as PubMed queries, explicit IDs, WebEnv history state, or input files.

Configure and maintain Python projects, dependencies, packaging, environments, linting, formatting, type checking, testing, builds, and publishing. Use for pyproject.toml, an existing repository toolchain, or repository-level Python tooling work, not for a standalone script.

Use when working with GenBank format files and need to create reference indexers for sequence data retrieval or processing within the Entrez Direct toolkit.

Use when inspecting fields, indexed terms, or term counts from a local EDirect postings index rather than the remote `einfo` endpoint.

Molecular featurization for ML (100+ featurizers). ECFP, MACCS, descriptors, pretrained models (ChemBERTa), convert SMILES to features, for QSAR and molecular ML.