Results for “gtid”

Performs free, open-source reverse engineering with Ghidra using headless or GUI modes, including decompilation, cross-references, and optional MCP workflows when IDA is unavailable.

Gtd reference tool. Use when working with gtd in life contexts.

Git-native issue tracking with first-class dependency support. Issues stored alongside code in .beads/ directory, dual-persisted in SQLite (queries) and JSONL (git-friendly history). Hash-based IDs, DAG dependencies, daemon mode with RPC, and LSP-inspired multi-workspace support.

Runs high-performance genomic interval analysis with gtars (databio), a Rust toolkit with Python bindings — the performance-critical backend for the geniml ML library. Use when computing overlaps/jaccard/coverage between BED region sets, indexing intervals with IGD, generating uniwig accumulation/coverage tracks, tokenizing genomic regions for ML, splitting single-cell fragments into pseudobulks, or computing GA4GH refget sequence digests. NOT for training region embeddings (use alterlab-geniml) or non-genomic spatial joins (use alterlab-geopandas). Part of the AlterLab Academic Skills suite.

Create or inspect runtime-adaptive isolated Git workspaces with explicit ownership and delivery routing

Gdb reference tool. Use when working with gdb in devtools contexts.

Toolkit de alta performance para análise de intervalos genômicos em Rust com bindings Python. Use ao trabalhar com regiões genômicas, arquivos BED, tracks de cobertura, detecção de sobreposições, tokenização para modelos de ML, ou análise de fragmentos em genômica computacional e aplicações de aprendizado de máquina.

Decide whether Git submodules are the right boundary for external dependencies, then execute the appropriate workflow: add and pin, bootstrap recursively, sync to a recorded commit, advance a tracked branch, edit inside a submodule without detached-HEAD surprises, remove cleanly, or configure CI checkout constraints.

Recommends treating central hypothyroidism before performing GH stimulation testing because CH may impair accurate diagnosis of GHD. Use when preparing for GH stimulation testing; triggers include patient requiring GH stimulation test with possible CH.

Executes small ad-hoc tasks with GSD guarantees, spawning planner and executor agents, tracking tasks in .planning/quick/, and updating STATE.md. Supports composable flags for discussion, research, plan-checking, and verification.

Code quality dashboard. Wraps existing project tools (type checker, linter, test runner, dead code detector, shell linter), computes a weighted composite 0-10 score, and tracks trends over time. Use when: "health check", "code quality", "how healthy is the codebase", "run all checks", "quality score". (gstack)

High-performance toolkit for genomic interval analysis in Rust with Python bindings. Use when working with genomic regions, BED files, coverage tracks, overlap detection, tokenization for ML models, or fragment analysis in computational genomics and machine learning applications.

Manage decentralized git repositories, identities, pull requests, issues, bounties, and agent tasks on the gitlawb network using cryptographic DIDs and Ed25519 signatures.

Suggests testing HPA axis functionality before and after starting GH replacement in patients not receiving glucocorticoid replacement with apparently normal pituitary-adrenal function. Triggers include initiating GH replacement in a GHD patient who is not on glucocorticoids and has normal adrenal function.

Central utility skill for GSD operations. Provides config parsing, slug generation, timestamps, path operations, and orchestrates calls to other specialized skills. Acts as the unified entry point that the original gsd-tools.cjs provided via its lib/ modules (commands, config, core, init).

Select oral and injectable glucose-lowering agents for a newly diagnosed patient with type 2 diabetes using a compelling-indication hierarchy (heart failure → ASCVD → DKD → obesity) followed by glucose-pattern matching. Incorporates modern GLP-1 receptor agonists — Ozempic (semaglutide SC, T2D), Mounjaro (tirzepatide), and Wegovy/Noveltreat (semaglutide 2.4 mg, obesity). Use when a clinician asks "what drug to start for newly diagnosed T2D", "which OAD to use", "first-line diabetes medication", "SGLT2i vs GLP-1 in new T2D", or presents a newly diagnosed T2D patient needing a personalised medication plan.

Titrates GH replacement dose to keep IGF-1 below the upper limit of normal and reduces dose when side effects appear. Use when monitoring GH replacement therapy; triggers include patient on GH replacement needing dose adjustment.

SVIT: Scaling up Visual Instruction Tuning

High-performance toolkit for genomic interval analysis in Rust with Python bindings. Use when working with genomic regions, BED files, coverage tracks, overlap detection, tokenization for ML models, or fragment analysis in computational genomics and machine learning applications.

Recommends using NSAIDs or DMARDs instead of glucocorticoids for chronic inflammatory disease (e.g., rheumatoid arthritis) to limit weight gain. Triggered when clinicians ask, “What anti‑inflammatory should I choose for this RA patient to avoid weight gain?” or “Should I avoid steroids in this obese patient with RA?”