Results for “htslib”

Read, write, and analyze genomic datasets including SAM/BAM/CRAM alignments, VCF/BCF variants, and FASTA/FASTQ sequences using a Pythonic interface to htslib.

Use when you need to identify, view, or copy HTS-format files (BAM, CRAM, VCF, BCF). Use for inspecting file headers or viewing textual representations of binary HTS files.

Set up the Holoscan Sensor Bridge demo environment end-to-end: clone the repo, configure the host per platform, build and run the demo container, and verify connectivity to the sensor board.

Discover, select, and run Holoscan Sensor Bridge example applications on a connected devkit over SSH, filtering by platform, board type, and sensors.

Simulates SSL stripping attacks using sslstrip, Bettercap, and mitmproxy in authorized environments to test HSTS enforcement, certificate validation, and HTTPS upgrade mechanisms.

Bundle TypeScript libraries with tsup — zero-config, powered by esbuild. Use when someone asks to "bundle a TypeScript library", "build npm package", "tsup", "publish TypeScript to npm", "build ESM and CJS", "bundle with esbuild", or "library bundling with zero config". Covers ESM/CJS dual output, declaration files, tree-shaking, and npm publishing.

Bundle TypeScript and JavaScript libraries with blazing-fast speed powered by Rolldown. Use when building libraries, generating type declarations, bundling for multiple formats, or migrating from tsup.

Discover and run Holoscan Sensor Bridge example applications on a connected devkit. Filters available apps by the user's platform, HSB software version, board type, and sensors. Supports timed execution, failure analysis, code-edit suggestions, and iterative re-runs.

Bundle TypeScript and JavaScript libraries with blazing-fast speed powered by Rolldown. Use when building libraries, generating type declarations, bundling for multiple formats, or migrating from tsup.

Read and write genomic alignment and variant files in Python with pysam (htslib bindings) — SAM/BAM/CRAM alignments, VCF/BCF variants, and FASTA/FASTQ sequences, plus region extraction and per-base coverage/pileup. Use when scripting NGS data-processing pipelines that parse, filter, index, or compute coverage over BAM/CRAM/VCF files. Part of the AlterLab Academic Skills suite.

Complete PortSwigger deep-dive with exact payloads for every lab variant including zero-day techniques

Discover and run Holoscan Sensor Bridge example applications on a connected devkit. Filters available apps by the user's platform, HSB software version, board type, and sensors. Supports timed execution, failure analysis, code-edit suggestions, and iterative re-runs.

Monitor system resources with htop and related tools. Use when a user asks to check CPU/memory usage, find resource-hungry processes, monitor server performance, or diagnose system bottlenecks.

Access the Human Metabolome Database (HMDB, 220K+ metabolites), searching by name, HMDB ID, or structure to retrieve chemical properties, biomarker data, NMR/MS reference spectra, and associated pathways. Use when identifying a human metabolite, looking up its biomarker or disease associations, matching NMR/MS spectra, or running metabolomics annotation. Part of the AlterLab Academic Skills suite.