Results for “mongodb-atlas”

Computes mass-spectral similarity and identifies compounds for metabolomics with matchms — comparing mass spectra, scoring similarity (cosine, modified cosine), and searching spectral libraries to annotate unknowns. Use when matching MS/MS spectra, identifying metabolites, or library searching; for full LC-MS/MS proteomics pipelines use pyopenms. Part of the AlterLab Academic Skills suite.

Access the Human Metabolome Database (HMDB, 220K+ metabolites), searching by name, HMDB ID, or structure to retrieve chemical properties, biomarker data, NMR/MS reference spectra, and associated pathways. Use when identifying a human metabolite, looking up its biomarker or disease associations, matching NMR/MS spectra, or running metabolomics annotation. Part of the AlterLab Academic Skills suite.

NoSQL injection playbook. Use when MongoDB-style operators, JSON query objects, flexible search filters, or backend query DSLs may allow data or logic abuse.

Add official Railway database services (Postgres, Redis, MySQL, MongoDB). Use when user wants to add a database, says "add postgres", "add redis", "add database", "connect to database", or "wire up the database". For other templates (Ghost, Strapi, n8n), use the railway-templates skill.

Documents MariaDB-specific ALTER TABLE syntax and behavior, including online DDL algorithms, lock modes, lock timeouts, idempotent subclauses, system versioning, and partition operations, for writing and reviewing schema migrations.

Add official Railway database services (Postgres, Redis, MySQL, MongoDB). Use when user wants to add a database, says "add postgres", "add redis", "add database", "connect to database", or "wire up the database". For other templates (Ghost, Strapi, n8n), use the railway-templates skill.

Query ChEMBL via the chembl_webresource_client Python client for curated bioactive molecules and drug-like compound libraries at scale — search compounds by structure or physicochemical properties, retrieve bioactivity measurements (IC50, Ki, EC50), and find inhibitors of a target. Use when screening chemical libraries, mining curated bioactivity for a protein, running SAR studies, or sourcing medicinal-chemistry data; for measured protein-ligand binding affinities (Ki/Kd/IC50) prefer alterlab-bindingdb instead. Part of the AlterLab Academic Skills suite.

Scaffolds a Spring Boot Kotlin project with Gradle, WebFlux, R2DBC, Redis, MongoDB, and Testcontainers, including Docker Compose setup.

Manage, annotate, and trace biological data with LaminDB, an open-source FAIR data framework that makes datasets queryable, versioned, and reproducible. Use when registering or querying biological datasets (scRNA-seq, spatial, flow cytometry), validating and curating data against ontologies (genes, cell types, diseases, tissues), tracking data lineage and computational workflows, building data lakehouses, or wiring integrations with Nextflow, Snakemake, W&B, or MLflow. Part of the AlterLab Academic Skills suite.

Mass spectrometry analysis. Process mzML/MGF/MSP, spectral similarity (cosine, modified cosine), metadata harmonization, compound ID, for metabolomics and MS data processing.

Comprehensive guide to bohb. Master the concepts, implementation, best practices, and real-world applications of bohb in professional environments.

Diagnose monogenic and syndromic obesity in children and adolescents using a structured step-by-step algorithm. Use this skill whenever a clinician suspects a genetic cause of obesity, asks about leptin deficiency, MC4R mutation, POMC deficiency, PCSK1 deficiency, leptin receptor deficiency, Bardet-Biedl syndrome, Prader-Willi syndrome, Alström syndrome, or any case of early-onset severe obesity with hyperphagia. Also trigger for questions about targeted pharmacotherapy including setmelanotide or metreleptin, or when to order a genomic obesity panel. Cross-references the NHS Genomic Test Finder skill to surface the relevant R-code once a diagnosis is reached.

Redis in-memory data store. Covers data structures, caching, and pub/sub. Use for caching and real-time features. USE WHEN: user mentions "redis", "caching", "session storage", "rate limiting", "pub/sub", "sorted sets", "in-memory database", "cache invalidation" DO NOT USE FOR: relational data - use `postgresql` or `mysql` instead, document storage - use `mongodb` instead, full-text search - use `elasticsearch` instead

Documents MariaDB-specific UPDATE syntax and behavior, including single-table vs multi-table forms, assignment evaluation order, RETURNING with OLD_VALUE(), temporal tables, and common pitfalls. Use when writing, generating, or reviewing UPDATE statements targeting MariaDB.

Utilize Shodan, the search engine for Internet-connected devices, to discover exposed assets, vulnerable ports, default credentials, and specific infrastructure configurations using advanced search queries (dorks).

MySQL 与 MariaDB 的 Schema、查询、索引、事务、复制及连接池模式——面向数据库管理员与后端开发者

Mass spectrometry analysis. Process mzML/MGF/MSP, spectral similarity (cosine, modified cosine), metadata harmonization, compound ID, for metabolomics and MS data processing.