Results for “tf-binding”

17 skills

Alterlab Jaspar

Query JASPAR for transcription factor binding site (TFBS) profiles (PWMs/PFMs), searching by TF name, species, or class, scanning DNA sequences for binding sites, and comparing matrices. Use when doing motif analysis, regulatory genomics, transcription factor binding prediction, or interpreting regulatory/non-coding GWAS variants. Part of the AlterLab Academic Skills suite.

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Reviews and repairs risky or unclear code with minimal validated changes, running a fixed-point loop until the diff is clean across two consecutive review cycles.

Provides patterns and strategies for migrating imperative TypeScript code to fp-ts functional programming patterns, covering error handling, null checks, callbacks, dependency injection, and loops.

Strict test-first gate only when explicitly requested or required by repository policy. Do not use for ordinary practical testing.

Guides minimal-diff code changes by defining contracts and invariants, choosing a stable seam, and proving the result with an executed check.

intense-visions

TypeScript Type Guards

Multimodal Few Shot Learning With Frozen Language Models Arx

Multimodal Few-Shot Learning with Frozen Language Models

Delivers measurement-driven performance optimization for latency, throughput, memory, and tail behavior, with correctness preservation and regression guards.

Replace exception-heavy TypeScript code with fp-ts Either and TaskEither for type-safe error handling as values.

Channel Tif To Ome Tiff

Convert single-channel TIF directories to pyramidal OME-TIFF with SubIFDs

Write reliable, maintainable Go tests using table-driven tests, subtests, benchmarks, fuzzing, and golden files following TDD methodology.

Provides practical patterns for using fp-ts with React, including hooks, state management, form validation, and data fetching.

intense-visions

Go testing patterns including table-driven tests, subtests, benchmarks, fuzzing, and test coverage. Follows TDD methodology with idiomatic Go practices.

Dynamic instrumentation via Frida - attach to or spawn a process, load a JS hook script, capture send() events into a lifecycle-managed run directory. Supports local, USB-attached, and remote frida-server targets.

Patterns for FPGA development including RTL design (Verilog/VHDL), timing closure, clock domain crossing, high-level synthesis, and verification. Covers both traditional HDL and modern HLS approaches. Use when ", " mentioned.