Results for “bio-scraping”

Performs constraint-based metabolic modeling with COBRApy: FBA, FVA, gene knockouts, flux sampling, and SBML model handling for systems biology and metabolic engineering.

Discovers podcasts via the iTunes Search API, parses RSS feeds, downloads audio, transcribes with OpenAI Whisper, chunks transcripts, and upserts results into a database table.

Automate web crawling and data extraction with Firecrawl: scrape pages, crawl sites, extract structured data, batch scrape URLs, and map website structures.

Extracts clean, LLM-optimized markdown from any URL, including JavaScript-rendered SPAs, with support for concurrent scraping of multiple URLs and options like main-content-only extraction and custom output formats.

Builds a configurable scraping agent that collects data from APIs, HTML, or RSS, enriches it with Gemini AI scoring, and stores results in Notion, Google Sheets, Supabase, or local files.

Perform constraint-based metabolic modeling with COBRApy: run FBA, FVA, gene knockouts, flux sampling, and manage SBML models for systems biology and metabolic engineering.

Retrieves and answers questions from a local knowledge base directory by navigating hierarchical index files, then progressively searching Markdown, PDF, and Excel files using grep, Read, pdfplumber, and pandas.

Perform fast genomic interval operations (overlap, nearest, merge, coverage, cluster, complement, subtract, count-overlaps), multi-format bioinformatics I/O, DataFusion SQL, and pileup on Polars DataFrames via the polars-bio library, serving as a scalable alternative to bioframe and bedtools.

Provides a standardized interface for ingesting raw data across domains such as genomics, network analysis, document review, and spatial mapping, converting it into semantic vectors for agent use.

Extract Xiaohongshu (RedNote) user profile information and published notes list by user ID, returning nickname, bio, follower/following counts, engagement totals, tags, and paginated notes with engagement stats.