Results for “biobank-schema”

Provides reference documentation and code patterns for using Biopython to handle biological sequences, file formats, database access, alignments, structures, and phylogenetics.

Manipulate biological sequences, parse FASTA/GenBank/PDB files, access NCBI databases, run BLAST searches, and perform phylogenetics using the Biopython library.

Query 40+ bioinformatics services (UniProt, KEGG, ChEMBL, Reactome) with a unified Python interface for cross-database analysis, identifier mapping, and sequence analysis.

Supabase-first database schema design for Nick's app stack. Generate production-ready Postgres schemas, Supabase SQL migrations, RLS policies, TypeScript types, seed data, role-aware access patterns, and schema checklists from plain English requirements. Use when starting any new project database, designing or reviewing schemas, adding tables, planning migrations, or turning product requirements into Supabase-ready data models. Bias toward product-led schema design, MVP discipline, core-workflow-first modeling, and avoiding premature table/role sprawl.

Processes and analyzes multiple physiological signals (ECG, respiration, EDA, EMG, PPG, EOG) together using NeuroKit2, including cross-signal features like RSA and event-related analysis.

Provides reference documentation and code patterns for Biopython, covering sequence handling, alignments, NCBI database access, BLAST, protein structures, phylogenetics, and other bioinformatics tasks.

Manages a MariaDB database schema across its lifecycle using the MariaDB Schema Management plugin via the mariadb-shell MCP server, covering project creation, versioned development, releases, and deployment.

Performs constraint-based metabolic modeling with COBRApy: FBA, FVA, gene knockouts, flux sampling, and SBML model handling for systems biology and metabolic engineering.

Analyze biological sequences, alignments, phylogenetic trees, and diversity metrics (alpha/beta, UniFrac) with ordination (PCoA) and PERMANOVA for microbiome and community ecology data.

Assesses genome, transcriptome, and protein completeness with BUSCO v6, automatically resolving the correct lineage from an organism description and generating reproducible reports.

Perform constraint-based metabolic modeling with COBRApy: run FBA, FVA, gene knockouts, flux sampling, and manage SBML models for systems biology and metabolic engineering.

Provides a pre-built Salesforce B2B Commerce data model as a Mermaid flowchart with color coding and relationship indicators, plus an optional script to enrich the diagram with live org metadata.