Results for “dna-sequence”
21 skills
gabrielmoreira Dnasp
Reimplements DnaSP 6 for population genetics analysis of aligned DNA sequences, including nucleotide diversity, haplotype statistics, neutrality tests, linkage disequilibrium, recombination, mismatch distribution, InDel polymorphism, between-population divergence, outgroup-based tests, HKA test, McDonald-Kreitman.
17 · bundle
gabrielmoreira Gi Chromatin
Predicts chromatin state across 919 tracks (histone marks, DNase, TF binding) for DNA sequences via the hosted Genomic Intelligence API, producing a report and JSON results.
17 · bundle
More results
k-dense-ai Bulk Rnaseq
Orchestrates a complete bulk RNA-seq differential-expression study from raw FASTQ reads through QC, alignment, quantification, differential expression, pathway enrichment, and publication figures.
30.2k · bundle
gabrielmoreira Rnaseq De
Performs differential expression analysis on bulk RNA-seq or pseudo-bulk count matrices with QC, PCA, and contrast testing.
17 · bundle
k-dense-ai Scikit Bio
Analyze biological sequences, alignments, phylogenetic trees, and diversity metrics (alpha/beta, UniFrac) with ordination (PCoA) and PERMANOVA for microbiome and community ecology data.
30.2k · bundle
gabrielmoreira Gi Annotation
Predicts gene and transcript structure from a DNA sequence using the hosted Genomic Intelligence API, producing a report and JSON output.
17 · bundle
k-dense-ai Onekgpd
Query the 1000 Genomes Project dataset at the individual participant level to find variants, carriers, and relatedness information.
30.2k · bundle
tools-only 153 Dxpy Bae649e0
Provides Python bindings to interact with the DNAnexus platform, enabling file uploads, job management, and API calls.
7 · bundle
k-dense-ai Gget
Query 20+ bioinformatics databases from the command line or Python for gene information, sequences, protein structures, enrichment analysis, and more.
30.2k · bundle
majiayu000 Rna
Annotates single-cell RNA-seq data by scoring marker genes, transferring labels with CellTypist, or reasoning over marker lists with an LLM.
567 · bundle
k-dense-ai Dnanexus Integration
Build and deploy apps/applets on the DNAnexus cloud genomics platform, manage data objects, run workflows, and use the dxpy Python SDK for genomics pipeline development and execution.
30.2k · bundle
mukul975 Performing Dns Tunneling Detection
Detects DNS tunneling by computing Shannon entropy of DNS query names, analyzing query length distributions, inspecting TXT record payloads, and identifying high subdomain cardinality using scapy for packet capture analysis.
24.6k · bundle
k-dense-ai Pydeseq2
Perform differential gene expression analysis for bulk RNA-seq data using PyDESeq2, supporting formulaic designs, Wald tests, FDR correction, LFC shrinkage, and result visualization.
30.2k · bundle
k-dense-ai Deeptools
Process and analyze high-throughput sequencing data with deepTools for quality control, normalization, comparison, and publication-quality visualizations of ChIP-seq, RNA-seq, and ATAC-seq experiments.
30.2k · bundle
gabrielmoreira Soul2dna
Compile SOUL.md character profiles into synthetic diploid genomes (.genome.json) via trait-to-allele mapping.
17 · bundle
k-dense-ai Depmap
Query the Cancer Dependency Map (DepMap) for cancer cell line gene dependency scores, drug sensitivity data, and gene effect profiles to identify cancer-specific vulnerabilities, synthetic lethal interactions, and validate oncology drug targets.
30.2k · bundle
mariadb-corporation Mariadb Create Sequence
Generates and reviews MariaDB CREATE SEQUENCE statements with version-specific syntax, defaults, and gotchas.
0
lingxling Onekgpd
Queries the 1000 Genomes Project dataset (3,202 whole-genome-sequenced individuals, GRCh38) at the level of individual participants, returning variants, carriers, and relatedness with allele frequencies and annotations.
253 · bundle
qhjqhj00 Depmap
Query the Cancer Dependency Map (DepMap) for CRISPR gene dependency scores, drug sensitivity data, and gene effect profiles to identify cancer-specific vulnerabilities, synthetic lethal interactions, and validate oncology drug targets.
3 · bundle
ecnu-icalk Snp
Analyzes sample phenotype and SNP genotype data to identify the best-performing homozygous genotype at each locus, excluding heterozygous and missing calls, and writes results to a CSV file.
559
gabrielmoreira Seq Wrangler
Runs NGS read QC, alignment, and BAM processing, wrapping FastQC, BWA/Bowtie2/Minimap2, SAMtools, and MultiQC for automated read-to-BAM workflows.
17 · bundle