Results for “fasta”
15 skills
gabrielmoreira analyze-fasta
Analyze a single FASTA file (nucleotide or protein), compute sequence-level metrics (GC, ORFs, MW, pI, GRAVY, secondary-structure fractions) with Biopython, and write a Markdown report plus structured JSON for downstream chaining.
17 · bundle
gabrielmoreira fastreer
Computes phylogenetic distance matrices and trees from genomic VCF or FASTA data using the fastreeR hybrid Java/Python toolkit.
17 · bundle
k-dense-ai biopython
Manipulate biological sequences, parse FASTA/GenBank/PDB files, access NCBI databases, run BLAST searches, and perform phylogenetics using the Biopython library.
30.2k · bundle
lingxling pysam
Read, write, and analyze genomic datasets including SAM/BAM/CRAM alignments, VCF/BCF variants, and FASTA/FASTQ sequences using a Pythonic interface to htslib.
253 · bundle
k-dense-ai pysam
Read, write, and manipulate genomic datasets including SAM/BAM/CRAM alignments, VCF/BCF variants, and FASTA/FASTQ sequences using a Pythonic interface to htslib.
30.2k · bundle
nvidia deepstream-sop
Build, deploy, evaluate, debug, and measure latency for a GPU-accelerated FastAPI service that detects whether operators perform assembly-line steps in order via event boundary detection and VLM classification.
2.2k · bundle
More results
microsoft azure-cosmos-db-py
Build production-grade Azure Cosmos DB NoSQL services with Python/FastAPI, including client setup with dual authentication, service layer CRUD operations, partition key strategies, parameterized queries, and TDD patterns.
2.7k · bundle
microsoft azure-monitor-opentelemetry-py
Configures Azure Monitor Application Insights with OpenTelemetry auto-instrumentation for Python applications in one line.
2.7k
nimoqup046-collab biopython
Provides reference documentation and code patterns for using Biopython to handle biological sequences, file formats, database access, alignments, structures, and phylogenetics.
2
gabrielmoreira galaxy-bridge
Discovers and executes bioinformatics tools from the Galaxy ecosystem via natural language, with multi-signal scoring, workflow templates, and reproducibility bundles.
17 · bundle
gabrielmoreira gi-annotation
Predicts gene and transcript structure from a DNA sequence using the hosted Genomic Intelligence API, producing a report and JSON output.
17 · bundle
orchestra-research experiment-tracking-swanlab
Track ML experiments with open-source run logging, local or self-hosted dashboards, and media visualization using SwanLab.
10.4k · bundle
gabrielmoreira gi-chromatin
Predicts chromatin state across 919 tracks (histone marks, DNase, TF binding) for DNA sequences via the hosted Genomic Intelligence API, producing a report and JSON results.
17 · bundle
k-dense-ai polars-bio
Perform high-performance genomic interval operations and bioinformatics file I/O on Polars DataFrames, including overlap, nearest, merge, coverage, complement, subtract, and reading/writing BED, VCF, BAM, GFF, FASTA, and FASTQ formats with streaming and cloud-native support.
30.2k · bundle
gabrielmoreira dnasp
Reimplements DnaSP 6 for population genetics analysis of aligned DNA sequences, including nucleotide diversity, haplotype statistics, neutrality tests, linkage disequilibrium, recombination, mismatch distribution, InDel polymorphism, between-population divergence, outgroup-based tests, HKA test, McDonald-Kreitman.
17 · bundle