Results for “i-mr”

Read, write, and manipulate DICOM medical imaging files, including pixel data extraction, metadata editing, anonymization, format conversion, and compression handling.

Provides statistical process control guidance including control chart selection, capability indices, and out-of-control rules for quality management.

Estimate cell state transitions from unspliced/spliced mRNA dynamics using scVelo, infer trajectory directions, compute latent time, and identify driver genes in single-cell RNA-seq data.

Analyze RNA velocity in single-cell RNA-seq data with scVelo, estimating cell state transitions from unspliced/spliced mRNA dynamics, inferring trajectory directions, computing latent time, and identifying driver genes.

Query and download public cancer imaging data from NCI Imaging Data Commons using idc-index. Access large-scale radiology (CT, MR, PET) and pathology datasets for AI training or research. No authentication required. Query by metadata, visualize in browser, check licenses.

Query cBioPortal via its keyless REST API for cancer genomics across TCGA, GENIE, MSK-IMPACT and hundreds of studies — somatic mutations, copy-number alterations (GISTIC), mRNA/protein expression, structural variants, and patient-level clinical/survival data. Use when asked how often a gene is mutated/amplified/deleted in a tumor type, to profile oncogenes or tumor suppressors across cancers (pan-cancer alteration frequency), to pull patient-level mutations joined to OS/clinical outcomes, or to validate a cancer target from cohort genomics. For germline variant pathogenicity use alterlab-clinvar; for mutational-signature (SBS) decomposition use alterlab-cosmic; for CRISPR/RNAi gene-dependency use alterlab-depmap; for aggregated target-disease evidence use alterlab-opentargets. Part of the AlterLab Academic Skills suite.