Results for “nvcf”

Annotates VCF variants using Ensembl VEP, ClinVar, and gnomAD, ranks them by predicted impact, and generates a reproducible report.

Queries video analytics incidents, alerts, metrics, and sensor data from Elasticsearch via the VA-MCP server.

Segments abdominal organs from CT NIfTI volumes using the NV-Segment-CT VISTA3D model, producing label maps and structured evidence JSON.

Converts a single CT DICOM series folder into a Hounsfield Unit NIfTI volume with affine metadata.

Build, run, and debug Nextflow data pipelines and nf-core workflows end to end, covering processes, channels, operators, configuration, testing, and deployment to HPC or cloud.

Store, query, and export genomic variant data (VCF/BCF) using TileDB's sparse array technology for scalable population genomics workflows.

After a Content Factory run completes successfully, harvest prompts, character references, cost data, and quality scores; diff them against the canonical prompt_registry and character_identity store; open improvement PRs (prompt updates + new character references). Runs ONCE per successful run, then closes. Also files findings into a CF_IMPROVER_ISSUES.csv (Intelliverse audit framework pattern) for the librarian's weekly roll-up.

Computes phylogenetic distance matrices and trees from genomic VCF or FASTA data using the fastreeR hybrid Java/Python toolkit.