Results for “psalm”

Read, write, and manipulate genomic datasets including SAM/BAM/CRAM alignments, VCF/BCF variants, and FASTA/FASTQ sequences using a Pythonic interface to htslib.

SQLAlchemy Python SQL toolkit and ORM with powerful query builder, relationship mapping, and database migrations via Alembic

Process and analyze mass spectrometry data: import spectra from MGF, mzML, MSP, and JSON formats; apply 40+ filters for metadata harmonization and peak cleaning; compute spectral similarities (cosine, modified cosine) for compound identification; build reproducible processing pipelines.

Generates spectrograms and multi-panel audio feature visualizations (mel, chroma, MFCC) from audio files via a Go CLI.

Write, review, debug, or test Python code that parses, inspects, transforms, builds, qualifies, optimizes, formats, or transpiles SQL with SQLGlot.

Understand and query the NPSP data model, including namespace prefixes, GAU allocations, recurring donations, relationships, and affiliations.

Use for writing, reviewing, debugging, migrating, or testing SQLAlchemy 2.x Core or ORM code involving Engine, Connection, Session, mapped models, select statements, transactions, pooling, results, loading, or AsyncSession. Do not use for raw database SQL with no SQLAlchemy boundary, Alembic migration design, DuckDB relations, or database administration.

Validates inputs, generates samplesheets and launch scripts, and optionally executes nf-core/pacsomatic matched tumor-normal workflows from BAM files, supporting local runs and scheduler submission (LSF/Slurm/PBS/SGE).

Read, write, and analyze genomic datasets including SAM/BAM/CRAM alignments, VCF/BCF variants, and FASTA/FASTQ sequences using a Pythonic interface to htslib.

Generates OMG-compliant BPMN 2.0 XML and SVG diagrams from natural language process descriptions, with validation, automatic layout, and optional process optimization advisories.