Results for “pymisp”

Analyze proteomics and metabolomics mass spectrometry data with PyOpenMS: read/write MS file formats, process spectra, detect and quantify features, identify peptides and proteins, and run end-to-end LC-MS/MS pipelines using ready-to-run scripts.

Explains MariaDB Connector/Python's DB API 2.0 behavior, including qmark placeholders, autocommit, prepared statements, buffered cursors, connection pooling, and error handling, for writing and reviewing Python code that uses the mariadb module.

Solve single and multi-objective optimization problems using NSGA-II/III, MOEA/D, and other evolutionary algorithms with customizable operators, constraint handling, and benchmark problems.

Provides comprehensive guidance for performing symbolic algebra, calculus, linear algebra, equation solving, physics calculations, and code generation using the SymPy library.

Read, write, and manipulate genomic datasets including SAM/BAM/CRAM alignments, VCF/BCF variants, and FASTA/FASTQ sequences using a Pythonic interface to htslib.

Perform exact symbolic mathematics in Python — algebra, calculus, equation solving, symbolic linear algebra, and code generation via lambdify or LaTeX.

Build, fit, validate, and compare Bayesian models using PyMC's modern API, including hierarchical models, MCMC sampling, variational inference, posterior predictive checks, and model comparison.