Results for “scatac-seq”

Performs differential expression analysis on bulk RNA-seq or pseudo-bulk count matrices with QC, PCA, and contrast testing.

Orchestrates a complete bulk RNA-seq differential-expression study from raw FASTQ reads through QC, alignment, quantification, differential expression, pathway enrichment, and publication figures.

Analyze single-cell RNA-seq data with Scanpy, covering quality control, normalization, dimensionality reduction, clustering, marker gene identification, and visualization.

Runs standard single-cell RNA-seq analysis with Scanpy, covering QC, normalization, dimensionality reduction, clustering, marker identification, visualization, and conversion of R single-cell formats to h5ad.

Design, implement, test, and maintain SIEM detection rules mapped to MITRE ATT&CK across Splunk, Elastic, and Sentinel platforms.

Detect APT lateral movement by chaining Windows authentication events, process execution telemetry, and network connection logs across hosts using Splunk SPL and Sigma rule format.

Slack archive: search, sync freshness, threads/DMs, SQL counts, and Slacrawl repo work.

Analyzes Zeek conn.log connection intervals using statistical methods to detect C2 beaconing patterns, flagging periodic connections with low jitter.

Generates and reviews MariaDB CREATE SEQUENCE statements with version-specific syntax, defaults, and gotchas.

Runs NGS read QC, alignment, and BAM processing, wrapping FastQC, BWA/Bowtie2/Minimap2, SAMtools, and MultiQC for automated read-to-BAM workflows.

Train unsupervised machine learning models on genomic interval data from BED files, including region embeddings, single-cell ATAC-seq analysis, and consensus peak building.