Results for “sequence-alignment”
10 skills
k-dense-ai scikit-bio
Analyze biological sequences, alignments, phylogenetic trees, and diversity metrics (alpha/beta, UniFrac) with ordination (PCoA) and PERMANOVA for microbiome and community ecology data.
30.2k · bundle
lucaspmarie-a11y biopython
Provides reference documentation and code patterns for Biopython, covering sequence handling, alignments, NCBI database access, BLAST, protein structures, phylogenetics, and other bioinformatics tasks.
5
nimoqup046-collab biopython
Provides reference documentation and code patterns for using Biopython to handle biological sequences, file formats, database access, alignments, structures, and phylogenetics.
2
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gabrielmoreira seq-wrangler
Runs NGS read QC, alignment, and BAM processing, wrapping FastQC, BWA/Bowtie2/Minimap2, SAMtools, and MultiQC for automated read-to-BAM workflows.
17 · bundle
nvidia tao-mine-aoi-images
Embeds target and source image parquets, then mines nearest-neighbour source images for augmentation in VCN AOI workflows.
2.2k · bundle
orchestra-research sentence-transformers
Generate high-quality sentence and text embeddings for semantic similarity, clustering, and retrieval using 5000+ pre-trained models. Supports multilingual and domain-specific embeddings for RAG and semantic search.
10.4k · bundle
qhjqhj00 menli
Evaluates the robustness and alignment with human judgment of reference-based and reference-free evaluation metrics for machine translation and summarization, particularly under adversarial conditions.
3
lingxling pysam
Read, write, and analyze genomic datasets including SAM/BAM/CRAM alignments, VCF/BCF variants, and FASTA/FASTQ sequences using a Pythonic interface to htslib.
253 · bundle
k-dense-ai pysam
Read, write, and manipulate genomic datasets including SAM/BAM/CRAM alignments, VCF/BCF variants, and FASTA/FASTQ sequences using a Pythonic interface to htslib.
30.2k · bundle
k-dense-ai phylogenetics
Build and analyze phylogenetic trees using MAFFT, IQ-TREE 2, and FastTree, with visualization via ETE3 or FigTree for evolutionary analysis, microbial genomics, viral phylodynamics, and molecular clock studies.
30.2k · bundle