Results for “sequences”
20 skills
claude-dev-suite oracle
Oracle Database specific features. Covers data types, sequences, synonyms, partitioning, and Oracle-specific SQL syntax. Use for Oracle database work. USE WHEN: user mentions "oracle", "oracle database", "sequences", "synonyms", "DUAL", "SYSDATE", "NVL", "DECODE", "Oracle partitioning", "Oracle specifics" DO NOT USE FOR: PostgreSQL - use `postgresql` instead, SQL Server - use `sqlserver` instead, PL/SQL programming - use `plsql` instead
28 · bundle
gabrielmoreira ncbi-datasets
Downloads genomes, genes, virus sequences, and taxonomy data from NCBI using the datasets and dataformat CLI tools.
17 · bundle
nimoqup046-collab biopython
Provides reference documentation and code patterns for using Biopython to handle biological sequences, file formats, database access, alignments, structures, and phylogenetics.
2
lingxling gget
Queries 20+ bioinformatics databases from the command line or Python for gene info, sequences, BLAST/BLAT, protein structures, viral data, and expression metrics.
253 · bundle
affaan-m gget
Quickly query genomic reference databases for Ensembl IDs, gene metadata, sequences, BLAST searches, and enrichment analysis using the gget CLI or Python package.
226k
k-dense-ai gget
Query 20+ bioinformatics databases from the command line or Python for gene information, sequences, protein structures, enrichment analysis, and more.
30.2k · bundle
More results
k-dense-ai biopython
Manipulate biological sequences, parse FASTA/GenBank/PDB files, access NCBI databases, run BLAST searches, and perform phylogenetics using the Biopython library.
30.2k · bundle
lingxling pysam
Read, write, and analyze genomic datasets including SAM/BAM/CRAM alignments, VCF/BCF variants, and FASTA/FASTQ sequences using a Pythonic interface to htslib.
253 · bundle
k-dense-ai pysam
Read, write, and manipulate genomic datasets including SAM/BAM/CRAM alignments, VCF/BCF variants, and FASTA/FASTQ sequences using a Pythonic interface to htslib.
30.2k · bundle
k-dense-ai scikit-bio
Analyze biological sequences, alignments, phylogenetic trees, and diversity metrics (alpha/beta, UniFrac) with ordination (PCoA) and PERMANOVA for microbiome and community ecology data.
30.2k · bundle
mariadb-corporation mariadb-create-sequence
Generates and reviews MariaDB CREATE SEQUENCE statements with version-specific syntax, defaults, and gotchas.
0
orchestra-research sentence-transformers
Generate high-quality sentence and text embeddings for semantic similarity, clustering, and retrieval using 5000+ pre-trained models. Supports multilingual and domain-specific embeddings for RAG and semantic search.
10.4k · bundle
gabrielmoreira seq-wrangler
Runs NGS read QC, alignment, and BAM processing, wrapping FastQC, BWA/Bowtie2/Minimap2, SAMtools, and MultiQC for automated read-to-BAM workflows.
17 · bundle
tools-only 164-aeon-39ccf444
Predict continuous values from temporal sequences using aeon's time series regressors, covering convolutional, deep learning, distance-based, feature-based, hybrid, interval-based, and shapelet-based approaches.
7 · bundle
mariadb-corporation mariadb-features
Explains MariaDB-specific features and behaviors that differ from MySQL, including system-versioned tables, RETURNING, sequences, and version-specific defaults, to help optimize and migrate MariaDB applications.
0
mariadb-corporation mariadb-truncate-table
Explains MariaDB-specific TRUNCATE TABLE semantics: DROP privilege, implicit commit, AUTO_INCREMENT reset, trigger and FK behavior, and restrictions on system-versioned tables and sequences.
0
gabrielmoreira gi-chromatin
Predicts chromatin state across 919 tracks (histone marks, DNase, TF binding) for DNA sequences via the hosted Genomic Intelligence API, producing a report and JSON results.
17 · bundle
zhaoxuya520 competition-pcap-protocol
Analyze PCAP files by reconstructing TCP/UDP sessions, decoding application-layer protocols, and correlating packet sequences with host or malware behavior for CTF challenges.
12.8k · bundle
gabrielmoreira dnasp
Reimplements DnaSP 6 for population genetics analysis of aligned DNA sequences, including nucleotide diversity, haplotype statistics, neutrality tests, linkage disequilibrium, recombination, mismatch distribution, InDel polymorphism, between-population divergence, outgroup-based tests, HKA test, McDonald-Kreitman.
17 · bundle
schattenspiegel numpy-python
Use for writing, reviewing, debugging, testing, or optimizing Python NumPy ndarray code. Trigger on array construction, shape/axis reasoning, dtypes and casting, broadcasting, indexing, copies/views, ufuncs, reductions, vectorization, random Generator, linear algebra, FFT, masked/structured arrays, memory layout, or NumPy interoperability. Do not use for pandas/Polars table semantics, JAX/CuPy-only arrays, symbolic SymPy, or pure Python sequences without a NumPy boundary.
0 · bundle