Results for “snakemake”

You are an expert in Knex.js, the flexible SQL query builder for Node.js that supports PostgreSQL, MySQL, SQLite, and MSSQL. You help developers write type-safe queries with a chainable API, manage database migrations and seeds, build complex joins and subqueries, and use transactions — providing direct SQL control without the overhead of a full ORM.

Translates natural language data intents into syntactically valid Perfetto SQL queries and executes them against a local trace file using trace_processor.

Validates inputs, generates samplesheets and launch scripts, and optionally executes nf-core/pacsomatic matched tumor-normal workflows from BAM files, supporting local runs and scheduler submission (LSF/Slurm/PBS/SGE).

Kysely type-safe SQL query builder - End-to-end type safety from schema to queries, migrations, transactions, plugins