Results for “anndata”
16 skills
lingxling Anndata
Manages annotated data matrices for single-cell genomics, covering creation, I/O, concatenation, and manipulation of AnnData objects in h5ad and zarr formats.
253 · bundle
k-dense-ai Anndata
Create, read, manipulate, and store annotated data matrices using the AnnData Python package, designed for single-cell genomics and general-purpose annotated data workflows.
30.2k · bundle
jorcan Scanpy
Analyze single-cell RNA-seq data with Scanpy, covering quality control, normalization, dimensionality reduction, clustering, marker gene identification, and visualization.
0 · bundle
k-dense-ai Scanpy
Run standard single-cell RNA-seq analysis pipelines: QC, normalization, dimensionality reduction, clustering, differential expression, and visualization using Scanpy.
30.2k · bundle
nimoqup046-collab Scanpy
Analyze single-cell RNA-seq data with Scanpy, covering quality control, normalization, clustering, marker gene identification, visualization, and trajectory analysis.
2
More results
lucaspmarie-a11y Scanpy
Analyze single-cell RNA-seq data with Scanpy, covering quality control, normalization, clustering, marker gene identification, visualization, and trajectory analysis.
5
majiayu000 Rna
Annotates single-cell RNA-seq data by scoring marker genes, transferring labels with CellTypist, or reasoning over marker lists with an LLM.
567 · bundle
phoroth Scanpy
Analyze single-cell RNA-seq data with Scanpy, covering quality control, normalization, clustering, marker gene identification, visualization, and trajectory analysis.
3
lingxling Lamindb
Manages biological datasets and models with LaminDB, covering setup, artifact registration, querying, lineage tracking, validation, ontology annotation, collections, branches, storage, and workflow integrations.
253 · bundle
antigravity Hasdata
Extract public web data, search engine results, and structured data from platforms like Google, Amazon, and Zillow using HasData APIs.
42.4k · bundle
antigravity Hasdata CLI
Provides command-line access to search, scraping, and structured web data from over 40 APIs including Google, Amazon, Yelp, and Zillow.
42.4k · bundle
phoroth Hasdata
Extract public web data via HasData APIs, including search engine results, structured data from ecommerce, travel, jobs, and local business platforms, with support for web scraping, pre-parsed APIs, and async jobs.
3 · bundle
k-dense-ai Pydeseq2
Perform differential gene expression analysis for bulk RNA-seq data using PyDESeq2, supporting formulaic designs, Wald tests, FDR correction, LFC shrinkage, and result visualization.
30.2k · bundle
lingxling Scanpy
Runs standard single-cell RNA-seq analysis with Scanpy, covering QC, normalization, dimensionality reduction, clustering, marker identification, visualization, and conversion of R single-cell formats to h5ad.
253 · bundle
lingxling Scvelo
Analyze RNA velocity in single-cell RNA-seq data with scVelo, estimating cell state transitions from unspliced/spliced mRNA dynamics, inferring trajectory directions, computing latent time, and identifying driver genes.
253 · bundle
k-dense-ai Cellxgene Census
Query the CZ CELLxGENE Census programmatically for versioned public single-cell and spatial transcriptomics data, enabling efficient access to cell metadata, gene expression slices, summary counts, and embeddings without downloading whole datasets.
30.2k · bundle