Results for “phy”
16 skills
k-dense-ai phylogenetics
Build and analyze phylogenetic trees using MAFFT, IQ-TREE 2, and FastTree, with visualization via ETE3 or FigTree for evolutionary analysis, microbial genomics, viral phylodynamics, and molecular clock studies.
30.2k · bundle
gabrielmoreira fastreer
Computes phylogenetic distance matrices and trees from genomic VCF or FASTA data using the fastreeR hybrid Java/Python toolkit.
17 · bundle
k-dense-ai etetoolkit
Manipulate phylogenetic trees, detect evolutionary events, integrate NCBI taxonomy, and create publication-quality visualizations using the ETE toolkit.
30.2k · bundle
antigravity biopython
Provides Python tools for biological computation, including sequence manipulation, file I/O, database access, structural bioinformatics, and phylogenetics.
42.4k
lucaspmarie-a11y biopython
Provides reference documentation and code patterns for Biopython, covering sequence handling, alignments, NCBI database access, BLAST, protein structures, phylogenetics, and other bioinformatics tasks.
5
More results
k-dense-ai scikit-bio
Analyze biological sequences, alignments, phylogenetic trees, and diversity metrics (alpha/beta, UniFrac) with ordination (PCoA) and PERMANOVA for microbiome and community ecology data.
30.2k · bundle
tools-only 019-bio-26c87b28
Processes and analyzes multiple physiological signals (ECG, respiration, EDA, EMG, PPG, EOG) together using NeuroKit2, including cross-signal features like RSA and event-related analysis.
7 · bundle
k-dense-ai neurokit2
Process and analyze physiological signals including ECG, EEG, EDA, RSP, PPG, EMG, and EOG using Python.
30.2k · bundle
k-dense-ai flowio
Parse FCS (Flow Cytometry Standard) files v2.0-3.1, extract events as NumPy arrays, read metadata and channels, and convert to CSV or DataFrame for flow cytometry data preprocessing.
30.2k · bundle
lingxling flowio
Parse FCS (Flow Cytometry Standard) files v2.0-3.1, extracting events as NumPy arrays, metadata, and channel information, with support for creating and modifying FCS files.
253 · bundle
k-dense-ai fluidsim
Run computational fluid dynamics simulations using Python, including Navier-Stokes equations, shallow water, and stratified flows with pseudospectral methods and HPC support.
30.2k · bundle
gabrielmoreira analyze-fasta
Analyze a single FASTA file (nucleotide or protein), compute sequence-level metrics (GC, ORFs, MW, pI, GRAVY, secondary-structure fractions) with Biopython, and write a Markdown report plus structured JSON for downstream chaining.
17 · bundle
nimoqup046-collab biopython
Provides reference documentation and code patterns for using Biopython to handle biological sequences, file formats, database access, alignments, structures, and phylogenetics.
2
k-dense-ai biopython
Manipulate biological sequences, parse FASTA/GenBank/PDB files, access NCBI databases, run BLAST searches, and perform phylogenetics using the Biopython library.
30.2k · bundle
tools-only 187-step-459c2d7b
Guides analysis of Neuropixels recordings from raw data to curated units, covering preprocessing, motion correction, spike sorting, quality metrics, and export.
7 · bundle
mukul975 detecting-anomalies-in-industrial-control-systems
Deploys anomaly detection for industrial control environments using machine learning models trained on OT network baselines, physics-based process models, and behavioral analysis of industrial protocol communications.
24.6k · bundle