Packs
1 packResults for “rna-seq”
17 skills
k-dense-ai deeptools
Process and analyze high-throughput sequencing data with deepTools for quality control, normalization, comparison, and publication-quality visualizations of ChIP-seq, RNA-seq, and ATAC-seq experiments.
30.2k · bundle
gabrielmoreira rnaseq-de
Performs differential expression analysis on bulk RNA-seq or pseudo-bulk count matrices with QC, PCA, and contrast testing.
17 · bundle
majiayu000 rna
Annotates single-cell RNA-seq data by scoring marker genes, transferring labels with CellTypist, or reasoning over marker lists with an LLM.
567 · bundle
k-dense-ai scanpy
Run standard single-cell RNA-seq analysis pipelines: QC, normalization, dimensionality reduction, clustering, differential expression, and visualization using Scanpy.
30.2k · bundle
k-dense-ai bulk-rnaseq
Orchestrates a complete bulk RNA-seq differential-expression study from raw FASTQ reads through QC, alignment, quantification, differential expression, pathway enrichment, and publication figures.
30.2k · bundle
antigravity scanpy
Analyze single-cell RNA-seq data using Scanpy, including quality control, normalization, clustering, marker gene identification, and visualization.
42.4k
More results
jorcan scanpy
Analyze single-cell RNA-seq data with Scanpy, covering quality control, normalization, dimensionality reduction, clustering, marker gene identification, and visualization.
0 · bundle
phoroth scanpy
Analyze single-cell RNA-seq data with Scanpy, covering quality control, normalization, clustering, marker gene identification, visualization, and trajectory analysis.
3
lingxling scvelo
Analyze RNA velocity in single-cell RNA-seq data with scVelo, estimating cell state transitions from unspliced/spliced mRNA dynamics, inferring trajectory directions, computing latent time, and identifying driver genes.
253 · bundle
nimoqup046-collab scanpy
Analyze single-cell RNA-seq data with Scanpy, covering quality control, normalization, clustering, marker gene identification, visualization, and trajectory analysis.
2
k-dense-ai pydeseq2
Perform differential gene expression analysis for bulk RNA-seq data using PyDESeq2, supporting formulaic designs, Wald tests, FDR correction, LFC shrinkage, and result visualization.
30.2k · bundle
lingxling scanpy
Runs standard single-cell RNA-seq analysis with Scanpy, covering QC, normalization, dimensionality reduction, clustering, marker identification, visualization, and conversion of R single-cell formats to h5ad.
253 · bundle
lucaspmarie-a11y scanpy
Analyze single-cell RNA-seq data with Scanpy, covering quality control, normalization, clustering, marker gene identification, visualization, and trajectory analysis.
5
gabrielmoreira dnasp
Reimplements DnaSP 6 for population genetics analysis of aligned DNA sequences, including nucleotide diversity, haplotype statistics, neutrality tests, linkage disequilibrium, recombination, mismatch distribution, InDel polymorphism, between-population divergence, outgroup-based tests, HKA test, McDonald-Kreitman.
17 · bundle
k-dense-ai scikit-bio
Analyze biological sequences, alignments, phylogenetic trees, and diversity metrics (alpha/beta, UniFrac) with ordination (PCoA) and PERMANOVA for microbiome and community ecology data.
30.2k · bundle
majiayu000 universal-single-cell-annotator
Annotates single-cell RNA-seq data by scoring marker genes, transferring labels with CellTypist, or reasoning over cluster markers with an LLM.
567 · bundle
k-dense-ai arboreto
Infer gene regulatory networks from gene expression data using scalable algorithms (GRNBoost2, GENIE3) with support for distributed computation.
30.2k · bundle