Results for “sequon-analysis”
8 skills
gabrielmoreira rnaseq-de
Performs differential expression analysis on bulk RNA-seq or pseudo-bulk count matrices with QC, PCA, and contrast testing.
17 · bundle
k-dense-ai scikit-survival
Perform survival analysis and time-to-event modeling in Python using scikit-survival, including Cox models, random survival forests, gradient boosting, survival SVMs, and evaluation metrics like concordance index and Brier score.
30.2k · bundle
k-dense-ai scikit-bio
Analyze biological sequences, alignments, phylogenetic trees, and diversity metrics (alpha/beta, UniFrac) with ordination (PCoA) and PERMANOVA for microbiome and community ecology data.
30.2k · bundle
lingxling aeon
Runs time series machine learning tasks—classification, regression, clustering, forecasting, anomaly detection, segmentation, and similarity search—using the scikit-learn compatible aeon toolkit.
253 · bundle
k-dense-ai bulk-rnaseq
Orchestrates a complete bulk RNA-seq differential-expression study from raw FASTQ reads through QC, alignment, quantification, differential expression, pathway enrichment, and publication figures.
30.2k · bundle
mukul975 detecting-beaconing-patterns-with-zeek
Analyzes Zeek conn.log connection intervals using statistical methods to detect C2 beaconing patterns, flagging periodic connections with low jitter.
24.6k · bundle
gabrielmoreira proteomics-de
Performs differential expression analysis on label-free quantitative (LFQ) proteomics data from MaxQuant and DIA-NN outputs, including preprocessing, imputation, statistical testing, and visualization.
17 · bundle
qhjqhj00 jq
Query, filter, transform, and aggregate JSON data using jq, with practical patterns for shell pipelines and integration with CLI tools.
3 · bundle