Results for “clu”

Provisions and manages Azure cloud services for Flutter backends, including AKS clusters, Azure Functions, SQL databases, Cosmos DB, Blob Storage, and Key Vault.

Run the standard single-cell RNA-seq analysis pipeline with Scanpy on AnnData — QC filtering, normalization, dimensionality reduction (PCA, UMAP, t-SNE), Leiden/Louvain clustering, marker/differential expression, PAGA trajectories, and plotting. Use when analyzing scRNA-seq data through clustering, cell-type annotation, DE, or pseudotime workflows; for building or reading the .h5ad data structure itself (layers, obs/var, concatenation, backed mode) prefer alterlab-anndata instead, and for RNA velocity from spliced/unspliced counts prefer alterlab-scvelo instead. Part of the AlterLab Academic Skills suite.

Detect poisoned training data and backdoored models across the ML pipeline using statistical analysis, activation clustering, and spectral signatures.

Implement eBPF-based runtime security observability and enforcement in Kubernetes clusters using Cilium Tetragon for kernel-level threat detection and policy enforcement.

Assess the security posture of Kubernetes etcd clusters by evaluating encryption at rest, TLS configuration, access controls, backup encryption, and network isolation.

Prove a feature works by delegating verification to an independent sub-agent that drives the real app, then open a pull request with the proof.

Manage and use Lambda Labs GPU cloud instances for ML training and inference with SSH access, persistent filesystems, and multi-node clusters.

Scaffold a one-command dev-local launcher for any codebase by investigating services, ports, and infra dependencies, then generating a single script with tmux session management.

Plan, create, and configure production-ready Azure Kubernetes Service (AKS) clusters. Covers Day-0 checklist, SKU selection (Automatic vs Standard), networking options (private API server, Azure CNI Overlay, egress configuration), security, and operations (autoscaling, upgrade strategy, cost anal...

Reserved and on-demand GPU cloud instances for ML training and inference. Use when you need dedicated GPU instances with simple SSH access, persistent filesystems, or high-performance multi-node clusters for large-scale training.

Reserved and on-demand GPU cloud instances for ML training and inference. Use when you need dedicated GPU instances with simple SSH access, persistent filesystems, or high-performance multi-node clusters for large-scale training.

Provisions and manages Redpanda Cloud BYOC clusters via the Control Plane API and the rpk cloud byoc plugin, covering networks, IAM wiring, private connectivity, and enterprise features.

Operate and extend barretlee/agent-pulse, the evidence-backed AI industry intelligence system: inspect source catalog and lifecycle, collect and normalize signals, bind evidence, cluster Events, evaluate system health, generate Scout hypotheses, export the privacy-safe public site, and verify release gates. Use when the user asks to run, configure, debug, extend, or explain Agent Pulse, its collectors, Control Room, narratives, Scout, or GitHub Pages output. Triggers on: agent-pulse, Agent Pulse, evidence-backed intelligence, source catalog, signal collection, Event clustering, source audit, Scout opportunity, public export, weekly brief, or AI industry intelligence pipeline.

Hardens managed Kubernetes clusters on EKS, AKS, and GKE by implementing Pod Security Standards, network policies, workload identity, RBAC scoping, image admission controls, and runtime security monitoring.

Deploy kernel-level runtime security monitoring on Linux hosts or Kubernetes clusters using eBPF and Cilium Tetragon for process execution tracking, network observability, file access auditing, and runtime enforcement.

Systematically evaluates Kubernetes cluster security by simulating attacker techniques against the API server, kubelet, etcd, pods, RBAC, network policies, and secrets using tools like kube-hunter, Kubescape, and kube-bench.

Standard single-cell RNA-seq analysis pipeline. Use for QC, normalization, dimensionality reduction (PCA/UMAP/t-SNE), clustering, differential expression, and visualization. Best for exploratory scRNA-seq analysis with established workflows. For deep learning models use scvi-tools; for data format questions use anndata.

Standard single-cell RNA-seq analysis pipeline. Use for QC, normalization, dimensionality reduction (PCA/UMAP/t-SNE), clustering, differential expression, and visualization. Best for exploratory scRNA-seq analysis with established workflows. For deep learning models use scvi-tools; for data format questions use anndata.

Scaffolds an isolated cloud development box per agent using Crabbox and Daytona, with its own database, dev server, and in-box browser for parallel testing without port or state collisions.

Enforce organizational security policies across Kubernetes clusters and CI/CD pipelines using Open Policy Agent (OPA) and Gatekeeper, including writing Rego policies, deploying admission controllers, and testing policies locally.

Scaffolds a per-task verification skill for a repo, including a dev-local launcher, a browser driver, and a verification SOP that spawns a sub-agent to drive the app and produce proof.

Run metric-driven iterative optimization loops -- define a measurable goal, run parallel experiments, measure each against hard gates or LLM-as-judge scores, keep improvements, and converge on the best solution. Use when optimizing clustering quality, search relevance, build performance, prompt quality, or any measurable outcome that benefits from systematic experimentation.

Prevent Kubernetes hallucinations by diagnosing and fixing failure modes: insecure workload defaults, resource starvation, network exposure, privilege sprawl, fragile rollouts, and API drift. Use when generating, reviewing, refactoring, or migrating manifests, Helm charts, Kustomize overlays, cluster policies, and platform-specific Kubernetes work for EKS, GKE, AKS, OpenShift, GitOps controllers, or observability stacks.

Sets up a codebase for reliable agent-driven development by making it legible (structured docs, custom lints, code graph), executable (one-command dev stack, cloud sandbox), and verifiable (e2e gate, verify-before-ship loop).

Configures and operates an Oxla cluster: YAML config and OXLA__ environment-variable overrides, node ports, roles, and leader election; storage backends (local/S3/GCS/Azure); memory limits; access control; and TLS/OIDC, plus the HTTP-based ConnectRPC admin service and Prometheus metrics endpoint. Also covers Oxla's.

Expert knowledge for Azure HDInsight development including troubleshooting, best practices, decision making, architecture & design patterns, limits & quotas, security, configuration, integrations & coding patterns, and deployment. Use when building Hive/Spark/Kafka/HBase jobs, tuning clusters, securing access, or integrating SQL, Cosmos DB, or Synapse, and other Azure HDInsight related development tasks. Not for Azure Databricks (use azure-databricks), Azure Synapse Analytics (use azure-synapse-analytics).

Expert knowledge for Azure Bastion development including best practices, decision making, architecture & design patterns, limits & quotas, security, configuration, and integrations & coding patterns. Use when configuring Bastion for AKS private clusters, VM scale sets, Entra ID auth, hub/spoke VNets, or native SSH/RDP clients, and other Azure Bastion related development tasks. Not for Azure Virtual Network (use azure-virtual-network), Azure Virtual Machines (use azure-virtual-machines), Azure VPN Gateway (use azure-vpn-gateway), Azure Firewall (use azure-firewall).

Build, slice, concatenate, read, and write AnnData annotated data matrices (obs, var, X, layers, obsm, uns) — the scverse data STRUCTURE, not an analysis pipeline. Use when creating or wrangling .h5ad/zarr files, managing cell and gene annotations, concatenating batches, or handling layers/obsm/backed-mode; for the QC, normalization, clustering, UMAP, and differential-expression analysis pipeline prefer alterlab-scanpy instead, and for RNA velocity from spliced/unspliced layers prefer alterlab-scvelo instead. Part of the AlterLab Academic Skills suite.

Run RNA velocity analysis with scVelo on single-cell RNA-seq data — estimate cell-state transitions from spliced/unspliced mRNA dynamics, infer trajectory direction, compute latent time, and identify driver genes. Use when adding directionality to trajectories or studying differentiation dynamics from spliced/unspliced layers (velocyto/STARsolo output); for the general QC, clustering, UMAP, and differential-expression analysis pipeline prefer alterlab-scanpy instead, and for .h5ad data-structure I/O and layer wrangling prefer alterlab-anndata instead. Part of the AlterLab Academic Skills suite.

Expert knowledge for SAP HANA on Azure Large Instances development including troubleshooting, best practices, decision making, architecture & design patterns, limits & quotas, security, configuration, integrations & coding patterns, and deployment. Use when deploying HANA Large Instances, S/4HANA or NetWeaver, Azure Monitor for SAP, HA/DR clusters, or RISE links, and other SAP HANA on Azure Large Instances related development tasks. Not for Azure Large Instances (use azure-large-instances), Azure Virtual Machines (use azure-virtual-machines), SQL Server on Azure Virtual Machines (use azure-sql-virtual-machines).

This skill should be used when a SKILL.md file needs compression, deduplication, or token reduction. It provides an embedding-based compression pipeline that detects and removes redundant chunks within SKILL.md files using local embeddings (all-MiniLM-L6-v2). Two-pass approach: (1) free intra-skill deduplication via cosine similarity clustering, (2) optional LLM-judged graded eval to detect pretraining overlap. Typical result: 25-46% token reduction with zero quality loss. This skill is not intended for editing skill content, creating new skills, routing optimization, or cross-skill deduplication.

Apply the scGPT single-cell foundation model (Cui 2024) to annotate and embed cells — zero-shot and fine-tuned cell-type annotation, gene/cell embeddings, batch integration, and gene-regulatory / perturbation inference from AnnData. Use when annotating cell types with a pretrained foundation model, generating scGPT embeddings, integrating batches with a transformer, or running zero-shot single-cell inference on an h5ad. For probabilistic latent models (scVI/scANVI) prefer alterlab-scvi-tools; for the standard QC→cluster→UMAP→DE pipeline prefer alterlab-scanpy; for the AnnData data structure itself prefer alterlab-anndata; for protein language models prefer alterlab-esm. Part of the AlterLab Academic Skills suite.

Classical end-to-end empirical analysis workflow in the modern tidyverse + econometrics R ecosystem — dplyr + tidyr + haven + fixest + sandwich + lmtest + clubSandwich + AER + ivreg + did + bacondecomp + HonestDiD + eventstudyr + rdrobust + rddensity + Synth + gsynth + synthdid + MatchIt + WeightIt + cobalt + ebal + grf + DoubleML + mediation + marginaleffects + modelsummary + kableExtra + gt + ggplot2 + ggpubr + cowplot + binsreg. **Defaults to economics empirical-paper style** (AER / QJE / AEJ) — every run produces a publication-ready output set with a multi-column regression table (M1→M6 progressive controls/FE) as the centerpiece, plus Table 1 (descriptives), mechanism / heterogeneity / robustness tables, and event-study + coefficient + trend figures. Covers the full 8-step R pipeline an applied economist runs on every paper — (1) data import & cleaning (read_dta/read_csv, naniar, janitor, validate-merges), (2) variable construction (mutate/across/winsorize/group_by + lag/lead with dplyr), (3) descriptive

Stand up a self-hostable, typo-tolerant search environment with Typesense — the open-source Algolia / ElasticSearch alternative (single C++ binary, <50ms instant search, no runtime deps). One routing-first skill: pick a server mode (binary download, official Docker image, or managed Typesense Cloud), install an API client (Python/JS/PHP/Ruby official; Go/Dart/C# community), design a collection schema, index documents, and run searches with typo tolerance, faceting/filtering, geo-search, sorting, grouping, synonyms, curation, scoped API keys, and federated multi-search — then wire an InstantSearch.js UI and a Raft-based HA cluster for production. Use when the user wants to build or operate an installable search backend, add site/app/product search, or migrate off Algolia/Elasticsearch. Triggers on: typesense, search engine, typo-tolerant search, algolia alternative, elasticsearch alternative, instantsearch, faceted search, geo search, vector search, self-hosted search, site search, product search.