Results for “annotation-pipeline”

Master orchestrator for the content update pipeline. Takes a published URL and produces an updated draft with side-by-side diff for editor review.

Build, slice, concatenate, read, and write AnnData annotated data matrices (obs, var, X, layers, obsm, uns) — the scverse data STRUCTURE, not an analysis pipeline. Use when creating or wrangling .h5ad/zarr files, managing cell and gene annotations, concatenating batches, or handling layers/obsm/backed-mode; for the QC, normalization, clustering, UMAP, and differential-expression analysis pipeline prefer alterlab-scanpy instead, and for RNA velocity from spliced/unspliced layers prefer alterlab-scvelo instead. Part of the AlterLab Academic Skills suite.

Configurable pipeline orchestrator for sequencing stages

Runs a three-phase AOI training pipeline: AutoML HPO baseline, DEFT iterative data improvement, and AutoML refinement on the augmented dataset.

Defines a gated Research-Plan-TDD-Review-Commit pipeline for orchestrating feature development, defect fixes, and refactoring tasks through composable phases and human approval gates.

Produces a complete narrated, subtitled, scored explainer video from a single topic prompt using a six-stage pipeline with script, voiceover, keyframes, animation, music, and local assembly.

Orchestrates the full academic research pipeline from exploration to final manuscript, coordinating research, writing, integrity verification, peer review, revision, and finalization stages with user confirmation checkpoints.

Orchestrate the complete post-first-draft polishing pipeline for an academic LaTeX paper by invoking five existing skills in fixed order: (1) paper-polish, (2) paper-self-revise, (3) paper-style, (4) paper-polish again, (5) reference-verify. Trigger when user says "paper pipeline" / "paper-pipeline" / "论文流水线" / "全流程打磨" / "一条龙打磨" / "初稿打磨" / "full polish pipeline" / "run the whole pipeline", or wants the entire post-draft polishing sequence run on a paper folder. Use this skill whenever the user asks for several paper-finishing steps (polish + revise + style + reference check) on one manuscript in one go, even if they don't name every individual skill.

Use when a researcher asks where to start, which project skill fits the current stage of a study, or in what order literature scoping, source access, vault upkeep, drafting, citation verification, disclosure, and review response should run.

Orchestrator for the full academic research pipeline: research -> write -> integrity check -> review -> revise -> re-review -> re-revise -> final integrity check -> finalize. Coordinates deep-research, academic-paper, and academic-paper-reviewer into a seamless 10-stage workflow with mandatory integrity verification, two-stage peer review, and reproducible quality gates. Triggers on: academic pipeline, research to paper, full paper workflow, paper pipeline, end-to-end paper, research-to-publication, complete paper workflow.

Design or repair a CI/CD pipeline with well-ordered parallel stages, lockfile-keyed caching, quality gates, and build-once artifact promotion.

Revenue operations analyst specializing in pipeline health diagnostics, deal velocity analysis, forecast accuracy, and data-driven sales coaching. Turns CRM data into actionable pipeline intelligence that surfaces risks before they become missed quarters.

End-to-end data pipeline for empirical research: fetch economic data from APIs (FRED, World Bank, IMF, BLS, OECD, Yahoo Finance), clean and transform raw data, construct strategy-specific variables, and validate panel structure. Use when asked to fetch data, download data, clean data, merge datasets, prepare analysis-ready data.

Construye pipelines ETL/ELT con Pandas: extracción, transformación y carga de datos con logging, manejo de errores, idempotencia y opciones de orquestación.

Full test suite improvement composite — audit health, prune dead tests, validate with mutation testing, capture rationale in ADR. Use after a major feature ship, before tightening coverage gates, or when the suite shows bloat, excessive skips, or slow runtime. Chains test-health → test-cleanup → mutation-test → adr-write.

Automates repetitive infrastructure and deployment tasks with Terraform, OpenTofu, Ansible, GitHub Actions, and n8n, enforcing safe practices like plan review and confirmation before applying changes.

Designs and implements production-grade ML pipeline infrastructure: configures experiment tracking, creates orchestration DAGs, builds feature store schemas, deploys model registries, and automates retraining and validation workflows.

Design, implement, and validate reproducible machine-learning pipelines spanning data preparation, training, evaluation, registry, and deployment gates. Use when the user requests an ML pipeline, needs to turn model scripts into an orchestrated workflow, or provides pipeline components that must be connected safely.

Orchestrates an end-to-end video production pipeline from source footage to a rough cut or final packaged video, with staged gates, resume support, and progress tracking.

Diseña y optimiza pipelines de CI/CD para GitHub Actions y GitLab CI, incluyendo automatización de tests, linting, builds y deploys.

Pipeline Intelligence

Generates CI/CD pipeline configurations for Adobe App Builder projects, including GitHub Actions workflows, Azure DevOps, and GitLab CI templates with OAuth S2S secrets injection and multi-workspace promotion.

Composite skill — safely refactor a module end-to-end with sequencing, parallel implementation, post-refactor cleanup, and rationale capture. Chains refactor-plan (phased plan + rollback) → three-man-team (architect/builder/reviewer in parallel) → fix-the-suite post-refactor → adr-write → docs-sync. Use for non-trivial refactors that need both careful sequencing and durable record.

Designs and implements CI/CD pipelines, infrastructure automation, and workflow optimization to reduce manual tasks.

Coordinate multi-stage edge research pipelines from candidate detection through strategy design, review, revision, and export.

Auto-review pipeline — reads the full CEO, design, eng, and DX review skills from disk and runs them sequentially with auto-decisions using 6 decision principles. (gstack)

Orchestrates the full academic research pipeline (research, write, integrity check, review, revise, re-review, re-revise, final integrity check, finalize), coordinating alterlab-deep-research, alterlab-paper-writer, and alterlab-paper-reviewer into a seamless 10-stage workflow with mandatory integrity verification, two-stage peer review, and reproducible quality gates. Use when the request mentions academic pipeline, research to paper, full paper workflow, paper pipeline, end-to-end paper, research-to-publication, or complete paper workflow. Part of the AlterLab Academic Skills suite.

Deploy a Data Pipeline to Fabric

Weekly pipeline health analysis with velocity metrics, stage distribution, forecasting, and actionable recommendations

Cross-runtime 2-stage pipeline for Claude Code, Codex/OMX, and Gemini/Antigravity/OMA: trace causal hypotheses, inject evidence into deep-interview style requirements crystallization, then hand off to the right runtime planner/executor.

High-fidelity ASCII/Braille rendering via the Risomorphism-1911 pipeline — edge-aware downsampling, presets, quality gates, and eikon mirror workflows

Wire ETL, ingestion, cron, edge-function, and queue jobs correctly. Use for "build a pipeline", "sync X into Y", "nightly aggregation", "cron double-counts", "dedupe", "backfill", "the numbers are wrong after a retry". Bakes in idempotency, atomic writes, data contracts, dead-letter, and observability.

CI/CD Pipeline Architect

Confidence Pipeline Fix (v5.4.1)