Results for “biological-pathway”

Validates inputs, generates samplesheets and launch scripts, and optionally executes nf-core/pacsomatic matched tumor-normal workflows from BAM files, supporting local runs and scheduler submission (LSF/Slurm/PBS/SGE).

Design and evolve engineering team structures for fast flow of change using the Team Topologies framework, including Conway's law, four team types, three interaction modes, and cognitive load management.

Use when a researcher asks where to start, which project skill fits the current stage of a study, or in what order literature scoping, source access, vault upkeep, drafting, citation verification, disclosure, and review response should run.

Generate pragmatic CI/CD pipelines from detected project stack signals, with fast baseline generation, repeatable checks, and environment-aware deployment stages.

Build and deploy bioinformatics workflows as serverless pipelines on the Latch platform using Python decorators, cloud data management, and GPU support.

Guides a structured planning pipeline for coding tasks, including scope detection, research, plan creation, and review.

Guides a structured planning pipeline for coding tasks, from scoping and research to plan creation, review, and handoff.

Authenticate, browse pipelines, samples, and projects, upload data, launch pipeline executions, and check run status on any Flow.bio instance via CLI.